miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 170086 0.68 0.870715
Target:  5'- gCGCGCUGCAGCUGgacgaagUGC-CGGUa--- -3'
miRNA:   3'- -GCGUGACGUCGACg------ACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 168624 0.73 0.583356
Target:  5'- gCGCcauCUGCuguuGCUGCUGCgccACGGUCaUCg -3'
miRNA:   3'- -GCGu--GACGu---CGACGACG---UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 162460 0.72 0.663749
Target:  5'- aGUACg--AGCUGCUGCugGG-CUUCa -3'
miRNA:   3'- gCGUGacgUCGACGACGugCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 160772 0.69 0.81529
Target:  5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3'
miRNA:   3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 155101 0.66 0.921655
Target:  5'- gGCGCUGCAGgaGCaggGCGUGGaggaCUUCu -3'
miRNA:   3'- gCGUGACGUCgaCGa--CGUGCCa---GAAG- -5'
14628 3' -56.4 NC_003521.1 + 153986 0.7 0.761437
Target:  5'- cCGUAgaGCAGCUGCUugcgcagcacGCACGGg--UCg -3'
miRNA:   3'- -GCGUgaCGUCGACGA----------CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 153201 0.67 0.91262
Target:  5'- gGC-CUGCGGCggcaccUGCUGCcacaccugcuacaacACGGcCUUCg -3'
miRNA:   3'- gCGuGACGUCG------ACGACG---------------UGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 150685 0.68 0.877851
Target:  5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3'
miRNA:   3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 150619 0.67 0.916078
Target:  5'- gGCugUugcgGCGGCUGCUGCGCaGG-Cg-- -3'
miRNA:   3'- gCGugA----CGUCGACGACGUG-CCaGaag -5'
14628 3' -56.4 NC_003521.1 + 144748 0.66 0.932117
Target:  5'- aCGaggaGCUGaccCGGCUGCUG-GCGGUCUg- -3'
miRNA:   3'- -GCg---UGAC---GUCGACGACgUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 144042 0.66 0.927002
Target:  5'- aGCGCcGCcGCUGCUGC-CGG-CggCg -3'
miRNA:   3'- gCGUGaCGuCGACGACGuGCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 141208 0.66 0.941199
Target:  5'- gGCGCUGCgccgccgGGC-GCUGCA-GGUCa-- -3'
miRNA:   3'- gCGUGACG-------UCGaCGACGUgCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 140847 0.67 0.904233
Target:  5'- aCGUGCUGgAGC-GCUuCGCGGUCUc- -3'
miRNA:   3'- -GCGUGACgUCGaCGAcGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 138328 0.66 0.942106
Target:  5'- uGgAcCUGCGGCUGCgcgacggcgucucggGCcucucuaagcacACGGUCUUCg -3'
miRNA:   3'- gCgU-GACGUCGACGa--------------CG------------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 137444 0.73 0.593359
Target:  5'- aGCACgcGCGGCUGCccGaCACGGUCUg- -3'
miRNA:   3'- gCGUGa-CGUCGACGa-C-GUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 137298 0.69 0.832039
Target:  5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3'
miRNA:   3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 136046 0.67 0.901755
Target:  5'- aCGCACcugugcgaccuggGCAGCgGCUGCGCGcUCaUCu -3'
miRNA:   3'- -GCGUGa------------CGUCGaCGACGUGCcAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.