miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 153986 0.7 0.761437
Target:  5'- cCGUAgaGCAGCUGCUugcgcagcacGCACGGg--UCg -3'
miRNA:   3'- -GCGUgaCGUCGACGA----------CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 177535 0.7 0.761437
Target:  5'- gGCGuggauCaGCAGCUGCUGCAccCGGUCg-- -3'
miRNA:   3'- gCGU-----GaCGUCGACGACGU--GCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 180822 0.7 0.761437
Target:  5'- uCGCGCUGCuGCagGCUGC-CGGUg--- -3'
miRNA:   3'- -GCGUGACGuCGa-CGACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 86099 0.7 0.77074
Target:  5'- uCGUugauCUGCAGCcGCUGgAUGGUgUUCu -3'
miRNA:   3'- -GCGu---GACGUCGaCGACgUGCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 173704 0.7 0.77074
Target:  5'- cCGCuGCUGUuGCUGCUGCugGGa---- -3'
miRNA:   3'- -GCG-UGACGuCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 91001 0.7 0.77074
Target:  5'- uGCugUuGCAGCUGCaGCA-GGUCggUCa -3'
miRNA:   3'- gCGugA-CGUCGACGaCGUgCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 88686 0.7 0.788978
Target:  5'- cCGCGCcGaa-CUGCUGCACGGgaccagCUUCg -3'
miRNA:   3'- -GCGUGaCgucGACGACGUGCCa-----GAAG- -5'
14628 3' -56.4 NC_003521.1 + 11815 0.7 0.788978
Target:  5'- gGUGCUGCAGUacucuagcuccgUGCUGC-CGGUCc-- -3'
miRNA:   3'- gCGUGACGUCG------------ACGACGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 99235 0.69 0.797897
Target:  5'- aGgGCUGUAGCUGacggUGCGCGcGUCgUCg -3'
miRNA:   3'- gCgUGACGUCGACg---ACGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 6682 0.69 0.797897
Target:  5'- uCGUGCUGCAgggccugcgcccGCgagcGCUGCugGGUCUc- -3'
miRNA:   3'- -GCGUGACGU------------CGa---CGACGugCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 49152 0.69 0.80667
Target:  5'- uGCGauugucGCGGCUGCUGCugGGgCUg- -3'
miRNA:   3'- gCGUga----CGUCGACGACGugCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 12256 0.69 0.81529
Target:  5'- -uCGCUGCcgAGCUGCaguccggugaacUGCACGGUCg-- -3'
miRNA:   3'- gcGUGACG--UCGACG------------ACGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 160772 0.69 0.81529
Target:  5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3'
miRNA:   3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 115949 0.69 0.81529
Target:  5'- aCGCGCUGUGcCUGCUGCcgcCGcUCUUCa -3'
miRNA:   3'- -GCGUGACGUcGACGACGu--GCcAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 104159 0.69 0.823749
Target:  5'- uGCuCUGCGGCgGCgGCGCGGg--UCg -3'
miRNA:   3'- gCGuGACGUCGaCGaCGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 137298 0.69 0.832039
Target:  5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3'
miRNA:   3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 103074 0.69 0.832039
Target:  5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3'
miRNA:   3'- gCGUGa-CG---UCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 29258 0.69 0.832039
Target:  5'- cCGCGagcgUGCGGCgcuacugGCUGUACGGUUaUCc -3'
miRNA:   3'- -GCGUg---ACGUCGa------CGACGUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.