miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 177746 0.68 0.840153
Target:  5'- gCGCGCcggcGCAGCUGUacgggGuCGCGGUCgUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGa----C-GUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 14788 0.68 0.840153
Target:  5'- gGUGCUGguGCUGCUGgACuGGUUc-- -3'
miRNA:   3'- gCGUGACguCGACGACgUG-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 21286 0.68 0.848084
Target:  5'- aGCGCUucGCGGUcugGCUGCgcgugGCGGUCaUCg -3'
miRNA:   3'- gCGUGA--CGUCGa--CGACG-----UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 180921 0.68 0.855826
Target:  5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3'
miRNA:   3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 183767 0.68 0.863371
Target:  5'- uCGcCGCUGCuaCUGCUGCgACGGUCc-- -3'
miRNA:   3'- -GC-GUGACGucGACGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 185107 0.68 0.863371
Target:  5'- gGCGCUGCGcgccgacauGCUGgaGCACGGg---- -3'
miRNA:   3'- gCGUGACGU---------CGACgaCGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 179672 0.68 0.870715
Target:  5'- gGgACUGCAGCaugaGCUGCACcagcaGGUCg-- -3'
miRNA:   3'- gCgUGACGUCGa---CGACGUG-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 170086 0.68 0.870715
Target:  5'- gCGCGCUGCAGCUGgacgaagUGC-CGGUa--- -3'
miRNA:   3'- -GCGUGACGUCGACg------ACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 214636 0.68 0.877851
Target:  5'- uGUGCUGCAGCgagcgGCUGCGCuucGUUggCa -3'
miRNA:   3'- gCGUGACGUCGa----CGACGUGc--CAGaaG- -5'
14628 3' -56.4 NC_003521.1 + 13264 0.68 0.877851
Target:  5'- uCGCugUGUAGCUGUaugGUgggugACGGcgUCUUCa -3'
miRNA:   3'- -GCGugACGUCGACGa--CG-----UGCC--AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 19893 0.68 0.877851
Target:  5'- gGCGCUGauccuGCUGCUGUuccUGGUgUUCu -3'
miRNA:   3'- gCGUGACgu---CGACGACGu--GCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 30238 0.68 0.877851
Target:  5'- uCGCGCUGCAGgU-CcGCGCGGUUg-- -3'
miRNA:   3'- -GCGUGACGUCgAcGaCGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 150685 0.68 0.877851
Target:  5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3'
miRNA:   3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 183546 0.68 0.877851
Target:  5'- gCGCACcGac-CUGCUGCugGGUCg-- -3'
miRNA:   3'- -GCGUGaCgucGACGACGugCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 179600 0.67 0.891483
Target:  5'- uGCagGCUGCcgcuGCUGCUGCGCGugauGUCg-- -3'
miRNA:   3'- gCG--UGACGu---CGACGACGUGC----CAGaag -5'
14628 3' -56.4 NC_003521.1 + 103007 0.67 0.891483
Target:  5'- aGCGCcuuaauaaUGCAGCUGCgcucguccGCcCGGUCUa- -3'
miRNA:   3'- gCGUG--------ACGUCGACGa-------CGuGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 19660 0.67 0.89797
Target:  5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3'
miRNA:   3'- gCGuGACgUCGACGACGUG-CCagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.