miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 19893 0.68 0.877851
Target:  5'- gGCGCUGauccuGCUGCUGUuccUGGUgUUCu -3'
miRNA:   3'- gCGUGACgu---CGACGACGu--GCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 170086 0.68 0.870715
Target:  5'- gCGCGCUGCAGCUGgacgaagUGC-CGGUa--- -3'
miRNA:   3'- -GCGUGACGUCGACg------ACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 179672 0.68 0.870715
Target:  5'- gGgACUGCAGCaugaGCUGCACcagcaGGUCg-- -3'
miRNA:   3'- gCgUGACGUCGa---CGACGUG-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 185107 0.68 0.863371
Target:  5'- gGCGCUGCGcgccgacauGCUGgaGCACGGg---- -3'
miRNA:   3'- gCGUGACGU---------CGACgaCGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 183767 0.68 0.863371
Target:  5'- uCGcCGCUGCuaCUGCUGCgACGGUCc-- -3'
miRNA:   3'- -GC-GUGACGucGACGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 180921 0.68 0.855826
Target:  5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3'
miRNA:   3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 21286 0.68 0.848084
Target:  5'- aGCGCUucGCGGUcugGCUGCgcgugGCGGUCaUCg -3'
miRNA:   3'- gCGUGA--CGUCGa--CGACG-----UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 14788 0.68 0.840153
Target:  5'- gGUGCUGguGCUGCUGgACuGGUUc-- -3'
miRNA:   3'- gCGUGACguCGACGACgUG-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 177746 0.68 0.840153
Target:  5'- gCGCGCcggcGCAGCUGUacgggGuCGCGGUCgUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGa----C-GUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 29258 0.69 0.832039
Target:  5'- cCGCGagcgUGCGGCgcuacugGCUGUACGGUUaUCc -3'
miRNA:   3'- -GCGUg---ACGUCGa------CGACGUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 103074 0.69 0.832039
Target:  5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3'
miRNA:   3'- gCGUGa-CG---UCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 137298 0.69 0.832039
Target:  5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3'
miRNA:   3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 104159 0.69 0.823749
Target:  5'- uGCuCUGCGGCgGCgGCGCGGg--UCg -3'
miRNA:   3'- gCGuGACGUCGaCGaCGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 115949 0.69 0.81529
Target:  5'- aCGCGCUGUGcCUGCUGCcgcCGcUCUUCa -3'
miRNA:   3'- -GCGUGACGUcGACGACGu--GCcAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 160772 0.69 0.81529
Target:  5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3'
miRNA:   3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 12256 0.69 0.81529
Target:  5'- -uCGCUGCcgAGCUGCaguccggugaacUGCACGGUCg-- -3'
miRNA:   3'- gcGUGACG--UCGACG------------ACGUGCCAGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.