miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 103074 0.69 0.832039
Target:  5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3'
miRNA:   3'- gCGUGa-CG---UCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 103267 0.66 0.927002
Target:  5'- uGCACUGCuGCUcgGCcgGCGCcGUCUcgUCg -3'
miRNA:   3'- gCGUGACGuCGA--CGa-CGUGcCAGA--AG- -5'
14628 3' -56.4 NC_003521.1 + 104159 0.69 0.823749
Target:  5'- uGCuCUGCGGCgGCgGCGCGGg--UCg -3'
miRNA:   3'- gCGuGACGUCGaCGaCGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 104768 0.66 0.937
Target:  5'- aGCGC-GCAGCcGCUGCccaGGUCc-- -3'
miRNA:   3'- gCGUGaCGUCGaCGACGug-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 105617 0.66 0.941654
Target:  5'- gGCGCUGCAGCaggGCgUGCuCGGg---- -3'
miRNA:   3'- gCGUGACGUCGa--CG-ACGuGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 109491 0.66 0.941654
Target:  5'- gGCACgggGCgaAGC-GCUGCACGGcCa-- -3'
miRNA:   3'- gCGUGa--CG--UCGaCGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 114090 0.72 0.653705
Target:  5'- uCGUGCUGUacaacGGCUGCUGUGCGGUg--- -3'
miRNA:   3'- -GCGUGACG-----UCGACGACGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 114249 0.73 0.61344
Target:  5'- gGCACgacgGCGGCUucccGCUGCccACGGcCUUCg -3'
miRNA:   3'- gCGUGa---CGUCGA----CGACG--UGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 114952 0.7 0.742507
Target:  5'- uCGCGCagcgGCGGCUGCUGCGgcGUCagUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGACGUgcCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 115949 0.69 0.81529
Target:  5'- aCGCGCUGUGcCUGCUGCcgcCGcUCUUCa -3'
miRNA:   3'- -GCGUGACGUcGACGACGu--GCcAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 120603 0.7 0.742507
Target:  5'- uGCACUGcCAGgUGUUGCGCcuGGUCa-- -3'
miRNA:   3'- gCGUGAC-GUCgACGACGUG--CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 136046 0.67 0.901755
Target:  5'- aCGCACcugugcgaccuggGCAGCgGCUGCGCGcUCaUCu -3'
miRNA:   3'- -GCGUGa------------CGUCGaCGACGUGCcAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 137298 0.69 0.832039
Target:  5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3'
miRNA:   3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 137444 0.73 0.593359
Target:  5'- aGCACgcGCGGCUGCccGaCACGGUCUg- -3'
miRNA:   3'- gCGUGa-CGUCGACGa-C-GUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 138328 0.66 0.942106
Target:  5'- uGgAcCUGCGGCUGCgcgacggcgucucggGCcucucuaagcacACGGUCUUCg -3'
miRNA:   3'- gCgU-GACGUCGACGa--------------CG------------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 140847 0.67 0.904233
Target:  5'- aCGUGCUGgAGC-GCUuCGCGGUCUc- -3'
miRNA:   3'- -GCGUGACgUCGaCGAcGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 141208 0.66 0.941199
Target:  5'- gGCGCUGCgccgccgGGC-GCUGCA-GGUCa-- -3'
miRNA:   3'- gCGUGACG-------UCGaCGACGUgCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.