Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14628 | 3' | -56.4 | NC_003521.1 | + | 28852 | 0.77 | 0.405736 |
Target: 5'- aCGaGCUGCGGCgGCgcgGCACGGUCgagUCg -3' miRNA: 3'- -GCgUGACGUCGaCGa--CGUGCCAGa--AG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 168624 | 0.73 | 0.583356 |
Target: 5'- gCGCcauCUGCuguuGCUGCUGCgccACGGUCaUCg -3' miRNA: 3'- -GCGu--GACGu---CGACGACG---UGCCAGaAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 223843 | 0.72 | 0.663749 |
Target: 5'- uGCuguccCUGCGGCUGCUGCuGCGG-CUg- -3' miRNA: 3'- gCGu----GACGUCGACGACG-UGCCaGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 114952 | 0.7 | 0.742507 |
Target: 5'- uCGCGCagcgGCGGCUGCUGCGgcGUCagUCg -3' miRNA: 3'- -GCGUGa---CGUCGACGACGUgcCAGa-AG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 56498 | 0.7 | 0.761437 |
Target: 5'- aGUACUGCGGCUGacgGCcGCGGUagcgUUUCa -3' miRNA: 3'- gCGUGACGUCGACga-CG-UGCCA----GAAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 153986 | 0.7 | 0.761437 |
Target: 5'- cCGUAgaGCAGCUGCUugcgcagcacGCACGGg--UCg -3' miRNA: 3'- -GCGUgaCGUCGACGA----------CGUGCCagaAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 49152 | 0.69 | 0.80667 |
Target: 5'- uGCGauugucGCGGCUGCUGCugGGgCUg- -3' miRNA: 3'- gCGUga----CGUCGACGACGugCCaGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 180921 | 0.68 | 0.855826 |
Target: 5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3' miRNA: 3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 235990 | 0.68 | 0.840153 |
Target: 5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3' miRNA: 3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 103074 | 0.69 | 0.832039 |
Target: 5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3' miRNA: 3'- gCGUGa-CG---UCGACGACGugCCagaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 137298 | 0.69 | 0.832039 |
Target: 5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3' miRNA: 3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 122686 | 0.69 | 0.823749 |
Target: 5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3' miRNA: 3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 160772 | 0.69 | 0.81529 |
Target: 5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3' miRNA: 3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 12256 | 0.69 | 0.81529 |
Target: 5'- -uCGCUGCcgAGCUGCaguccggugaacUGCACGGUCg-- -3' miRNA: 3'- gcGUGACG--UCGACG------------ACGUGCCAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 114090 | 0.72 | 0.653705 |
Target: 5'- uCGUGCUGUacaacGGCUGCUGUGCGGUg--- -3' miRNA: 3'- -GCGUGACG-----UCGACGACGUGCCAgaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 198029 | 0.72 | 0.643644 |
Target: 5'- gGCGCgUGCAGCcgccggGCUGCACGGgcaggugCUUg -3' miRNA: 3'- gCGUG-ACGUCGa-----CGACGUGCCa------GAAg -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 114249 | 0.73 | 0.61344 |
Target: 5'- gGCACgacgGCGGCUucccGCUGCccACGGcCUUCg -3' miRNA: 3'- gCGUGa---CGUCGA----CGACG--UGCCaGAAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 207547 | 0.73 | 0.603389 |
Target: 5'- aGCuCUcGCAGCUGCUGCACGaUCg-- -3' miRNA: 3'- gCGuGA-CGUCGACGACGUGCcAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 137444 | 0.73 | 0.593359 |
Target: 5'- aGCACgcGCGGCUGCccGaCACGGUCUg- -3' miRNA: 3'- gCGUGa-CGUCGACGa-C-GUGCCAGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 138328 | 0.66 | 0.942106 |
Target: 5'- uGgAcCUGCGGCUGCgcgacggcgucucggGCcucucuaagcacACGGUCUUCg -3' miRNA: 3'- gCgU-GACGUCGACGa--------------CG------------UGCCAGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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