miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 115949 0.69 0.81529
Target:  5'- aCGCGCUGUGcCUGCUGCcgcCGcUCUUCa -3'
miRNA:   3'- -GCGUGACGUcGACGACGu--GCcAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 99235 0.69 0.797897
Target:  5'- aGgGCUGUAGCUGacggUGCGCGcGUCgUCg -3'
miRNA:   3'- gCgUGACGUCGACg---ACGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 91001 0.7 0.77074
Target:  5'- uGCugUuGCAGCUGCaGCA-GGUCggUCa -3'
miRNA:   3'- gCGugA-CGUCGACGaCGUgCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 26565 0.71 0.732897
Target:  5'- aGCugaUGCAcaagauGCUGCUGUgccucuacACGGUCUUCg -3'
miRNA:   3'- gCGug-ACGU------CGACGACG--------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 21286 0.68 0.848084
Target:  5'- aGCGCUucGCGGUcugGCUGCgcgugGCGGUCaUCg -3'
miRNA:   3'- gCGUGA--CGUCGa--CGACG-----UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 88686 0.7 0.788978
Target:  5'- cCGCGCcGaa-CUGCUGCACGGgaccagCUUCg -3'
miRNA:   3'- -GCGUGaCgucGACGACGUGCCa-----GAAG- -5'
14628 3' -56.4 NC_003521.1 + 26163 0.71 0.6937
Target:  5'- aCGgACUGCuGCUGCUGgagacggccauCACGGugcUCUUCa -3'
miRNA:   3'- -GCgUGACGuCGACGAC-----------GUGCC---AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 177746 0.68 0.840153
Target:  5'- gCGCGCcggcGCAGCUGUacgggGuCGCGGUCgUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGa----C-GUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 98821 0.71 0.683755
Target:  5'- gGCGUUGCAGCUGCUugGCGCGGg---- -3'
miRNA:   3'- gCGUGACGUCGACGA--CGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 6682 0.69 0.797897
Target:  5'- uCGUGCUGCAgggccugcgcccGCgagcGCUGCugGGUCUc- -3'
miRNA:   3'- -GCGUGACGU------------CGa---CGACGugCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 104159 0.69 0.823749
Target:  5'- uGCuCUGCGGCgGCgGCGCGGg--UCg -3'
miRNA:   3'- gCGuGACGUCGaCGaCGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 11815 0.7 0.788978
Target:  5'- gGUGCUGCAGUacucuagcuccgUGCUGC-CGGUCc-- -3'
miRNA:   3'- gCGUGACGUCG------------ACGACGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 173704 0.7 0.77074
Target:  5'- cCGCuGCUGUuGCUGCUGCugGGa---- -3'
miRNA:   3'- -GCG-UGACGuCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 180822 0.7 0.761437
Target:  5'- uCGCGCUGCuGCagGCUGC-CGGUg--- -3'
miRNA:   3'- -GCGUGACGuCGa-CGACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 120603 0.7 0.742507
Target:  5'- uGCACUGcCAGgUGUUGCGCcuGGUCa-- -3'
miRNA:   3'- gCGUGAC-GUCgACGACGUG--CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 19660 0.67 0.89797
Target:  5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3'
miRNA:   3'- gCGuGACgUCGACGACGUG-CCagaag -5'
14628 3' -56.4 NC_003521.1 + 183546 0.68 0.877851
Target:  5'- gCGCACcGac-CUGCUGCugGGUCg-- -3'
miRNA:   3'- -GCGUGaCgucGACGACGugCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 170086 0.68 0.870715
Target:  5'- gCGCGCUGCAGCUGgacgaagUGC-CGGUa--- -3'
miRNA:   3'- -GCGUGACGUCGACg------ACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.