miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 5' -49.4 NC_003521.1 + 141082 0.66 0.997634
Target:  5'- --gCCGGGCCAaaUGAGCGGc- -3'
miRNA:   3'- ccaGGCUCGGUg-ACUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 155441 0.66 0.997634
Target:  5'- uGG-CCGAcCCGCUGGGCGaGUc -3'
miRNA:   3'- -CCaGGCUcGGUGACUCGC-CAa -5'
14629 5' -49.4 NC_003521.1 + 209522 0.66 0.997177
Target:  5'- cGGUgaCCGucGCCGCUGccGCGGUUa -3'
miRNA:   3'- -CCA--GGCu-CGGUGACu-CGCCAA- -5'
14629 5' -49.4 NC_003521.1 + 217881 0.66 0.996649
Target:  5'- --cCCGAGCCAuCUcAGCGGUc -3'
miRNA:   3'- ccaGGCUCGGU-GAcUCGCCAa -5'
14629 5' -49.4 NC_003521.1 + 113392 0.66 0.996649
Target:  5'- uGGccgaCGAGCCGCUG-GCGGc- -3'
miRNA:   3'- -CCag--GCUCGGUGACuCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 129230 0.66 0.996649
Target:  5'- aGUCCGGcGCCGCUGGccacgcGCGGc- -3'
miRNA:   3'- cCAGGCU-CGGUGACU------CGCCaa -5'
14629 5' -49.4 NC_003521.1 + 177990 0.67 0.995349
Target:  5'- --gCCGGGUCAgaGAGCGGg- -3'
miRNA:   3'- ccaGGCUCGGUgaCUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 107782 0.67 0.994559
Target:  5'- --gCUGAGCCACUGuGGUGGg- -3'
miRNA:   3'- ccaGGCUCGGUGAC-UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 189278 0.67 0.994559
Target:  5'- -cUCCGAGCCACcaaGAuGCGGa- -3'
miRNA:   3'- ccAGGCUCGGUGa--CU-CGCCaa -5'
14629 5' -49.4 NC_003521.1 + 27848 0.67 0.993664
Target:  5'- aGGg-CGAGCCGCUGGGCa--- -3'
miRNA:   3'- -CCagGCUCGGUGACUCGccaa -5'
14629 5' -49.4 NC_003521.1 + 121004 0.67 0.993374
Target:  5'- aGUCgGAGCCGCUGcuccagaccuccucGGCGGc- -3'
miRNA:   3'- cCAGgCUCGGUGAC--------------UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 87807 0.67 0.992655
Target:  5'- cGGcCUGGGCCAg-GAGCGGa- -3'
miRNA:   3'- -CCaGGCUCGGUgaCUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 151103 0.67 0.992655
Target:  5'- gGGU-CGGGCCGCUGggggauGGCGGg- -3'
miRNA:   3'- -CCAgGCUCGGUGAC------UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 47178 0.68 0.98728
Target:  5'- cGUCCGGGUCGCUGuacgacGUGGUc -3'
miRNA:   3'- cCAGGCUCGGUGACu-----CGCCAa -5'
14629 5' -49.4 NC_003521.1 + 196391 0.68 0.985552
Target:  5'- --gCCGAGCCGCcgucacgaUGGGCGGg- -3'
miRNA:   3'- ccaGGCUCGGUG--------ACUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 127829 0.69 0.984431
Target:  5'- aGGUgcCCGGgugguaguggcgcccGCCGCUGAGCGGc- -3'
miRNA:   3'- -CCA--GGCU---------------CGGUGACUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 91569 0.69 0.981562
Target:  5'- aGGUCCGc-CCACaagGGGCGGUg -3'
miRNA:   3'- -CCAGGCucGGUGa--CUCGCCAa -5'
14629 5' -49.4 NC_003521.1 + 113901 0.69 0.979282
Target:  5'- aGGUaggCGAGCUGCUGAGCGa-- -3'
miRNA:   3'- -CCAg--GCUCGGUGACUCGCcaa -5'
14629 5' -49.4 NC_003521.1 + 57180 0.69 0.9768
Target:  5'- aGGUCCGAGCCGuguugguaGAGCuGGUg -3'
miRNA:   3'- -CCAGGCUCGGUga------CUCG-CCAa -5'
14629 5' -49.4 NC_003521.1 + 95765 0.69 0.9768
Target:  5'- cGUCCGAGCCGCccAGaCGGUc -3'
miRNA:   3'- cCAGGCUCGGUGacUC-GCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.