miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 240548 0.69 0.675673
Target:  5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 234211 0.69 0.675673
Target:  5'- -gCGCGGCCuCCGAAGaCGGUUCCGu-- -3'
miRNA:   3'- agGUGCCGG-GGCUUC-GCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 233432 0.75 0.366483
Target:  5'- cUCCgACGGCCUCGAcGCGGUCCCu--- -3'
miRNA:   3'- -AGG-UGCCGGGGCUuCGCUAGGGucuu -5'
14630 3' -59.6 NC_003521.1 + 228215 1.06 0.003177
Target:  5'- uUCCACGGCCCCGAAGCGAUCCCAGAAg -3'
miRNA:   3'- -AGGUGCCGGGGCUUCGCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 219199 0.66 0.837339
Target:  5'- cCCA-GGCCCaUGAuGGCGGUCgCCAGGc -3'
miRNA:   3'- aGGUgCCGGG-GCU-UCGCUAG-GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 216865 0.66 0.837339
Target:  5'- uUCCA-GGCCCgUGGAGCGGgacaUCCAGGc -3'
miRNA:   3'- -AGGUgCCGGG-GCUUCGCUa---GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 210962 0.68 0.751554
Target:  5'- gCCACGGCCUUcu-GCG-UCCCGGGc -3'
miRNA:   3'- aGGUGCCGGGGcuuCGCuAGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 209272 0.68 0.723596
Target:  5'- aCCugGGCUUCGccGAGUGGUCgCAGAc -3'
miRNA:   3'- aGGugCCGGGGC--UUCGCUAGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 203627 0.7 0.6367
Target:  5'- aCCGCGGUCCCccGGCuccuccUCCCAGAAa -3'
miRNA:   3'- aGGUGCCGGGGcuUCGcu----AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 200337 0.66 0.845097
Target:  5'- gCUGCGGCgCCGuGGCGcgCCgCGGAc -3'
miRNA:   3'- aGGUGCCGgGGCuUCGCuaGG-GUCUu -5'
14630 3' -59.6 NC_003521.1 + 199998 0.66 0.860081
Target:  5'- gUCCAUGgcgcgggccccGCCCCGAGGCGAauagcugaccgCgCCGGGAg -3'
miRNA:   3'- -AGGUGC-----------CGGGGCUUCGCUa----------G-GGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 196933 0.66 0.836554
Target:  5'- gUCCAcCGGCagcaCCGGuagcgugGGCGAcggCCCGGGAg -3'
miRNA:   3'- -AGGU-GCCGg---GGCU-------UCGCUa--GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 194878 0.66 0.821318
Target:  5'- cUCCACGGCCCucuuCGAccGCGAgaucgCCUGGGc -3'
miRNA:   3'- -AGGUGCCGGG----GCUu-CGCUa----GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 187238 0.66 0.837339
Target:  5'- gCCAagUGaGCUUCGAGGCGGcCCCGGGAg -3'
miRNA:   3'- aGGU--GC-CGGGGCUUCGCUaGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 186478 0.69 0.694994
Target:  5'- gCCAC-GCCCCG-AGUGG-CCCAGGg -3'
miRNA:   3'- aGGUGcCGGGGCuUCGCUaGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 181610 0.67 0.787453
Target:  5'- gUCCAgGGCCCCGAucuccacGCGA--CUAGGAu -3'
miRNA:   3'- -AGGUgCCGGGGCUu------CGCUagGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 180653 0.66 0.845097
Target:  5'- gCCGCGGCUcgcuaCCGggGCGAcgacauccaCCAGGu -3'
miRNA:   3'- aGGUGCCGG-----GGCuuCGCUag-------GGUCUu -5'
14630 3' -59.6 NC_003521.1 + 179044 0.66 0.821318
Target:  5'- aUCCAC-GCCggagCCGGcGGCGGUCCCGGu- -3'
miRNA:   3'- -AGGUGcCGG----GGCU-UCGCUAGGGUCuu -5'
14630 3' -59.6 NC_003521.1 + 178983 0.73 0.448608
Target:  5'- gCCGCGGUUCCGcGGCGcccUCCCAGGg -3'
miRNA:   3'- aGGUGCCGGGGCuUCGCu--AGGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 178719 0.71 0.57827
Target:  5'- cCCGCgcgGGCgCCGAAGCGuUCCCGGu- -3'
miRNA:   3'- aGGUG---CCGgGGCUUCGCuAGGGUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.