miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 119032 0.68 0.873332
Target:  5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3'
miRNA:   3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 216288 0.68 0.858858
Target:  5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3'
miRNA:   3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5'
14630 5' -57.2 NC_003521.1 + 62411 0.68 0.858858
Target:  5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3'
miRNA:   3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 100240 0.68 0.85133
Target:  5'- gUCUCGccgGCcgcgaaauccucGGGCGGCGCCUGGGUg-- -3'
miRNA:   3'- -AGAGUa--CG------------CCUGUUGCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 114174 0.68 0.858858
Target:  5'- aCUCGgaccCGGugAucgGCUCGGGCAUCa -3'
miRNA:   3'- aGAGUac--GCCugUug-CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 37388 0.68 0.866193
Target:  5'- gUUCGagGCGGcgGgGGCGCCCGGGCcUUg -3'
miRNA:   3'- aGAGUa-CGCC--UgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 61978 0.68 0.843618
Target:  5'- gUCUCG-GUGGACcaAGCGCagCGGGaCAUCu -3'
miRNA:   3'- -AGAGUaCGCCUG--UUGCGg-GCCC-GUAG- -5'
14630 5' -57.2 NC_003521.1 + 4435 0.68 0.835726
Target:  5'- aCUCc--CGGAgAACGCCCGaGGCgAUCu -3'
miRNA:   3'- aGAGuacGCCUgUUGCGGGC-CCG-UAG- -5'
14630 5' -57.2 NC_003521.1 + 73706 0.67 0.880268
Target:  5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3'
miRNA:   3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 135925 0.67 0.899826
Target:  5'- cCUCGgccacggccGCGGgauguGCGACGCCuCGGGCGc- -3'
miRNA:   3'- aGAGUa--------CGCC-----UGUUGCGG-GCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 31618 0.67 0.882986
Target:  5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3'
miRNA:   3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 46065 0.67 0.89352
Target:  5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3'
miRNA:   3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 150431 0.67 0.89352
Target:  5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3'
miRNA:   3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 130223 0.67 0.899826
Target:  5'- cCUCAUGgUGGAgAucggccGCGUgCUGGGCGUCa -3'
miRNA:   3'- aGAGUAC-GCCUgU------UGCG-GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 145276 0.67 0.899826
Target:  5'- cCUCG-GCGGcCAgcucGCGCgccggcgucucgCCGGGCAUCc -3'
miRNA:   3'- aGAGUaCGCCuGU----UGCG------------GGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 122103 0.67 0.905916
Target:  5'- gUCUCGUGCGGcugcaGCGGCGUcucgCCGcGGCu-- -3'
miRNA:   3'- -AGAGUACGCC-----UGUUGCG----GGC-CCGuag -5'
14630 5' -57.2 NC_003521.1 + 150723 0.67 0.905916
Target:  5'- cUCUCGgccGUGGGCcACGuCCUGGGCc-- -3'
miRNA:   3'- -AGAGUa--CGCCUGuUGC-GGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 16485 0.67 0.886336
Target:  5'- gUCUaCGUGCGG-CGACGCUacgagcaCGGGCu-- -3'
miRNA:   3'- -AGA-GUACGCCuGUUGCGG-------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 22632 0.67 0.880268
Target:  5'- gCUCAU-CGGcACcugcuACGCCUGGGuCGUCg -3'
miRNA:   3'- aGAGUAcGCC-UGu----UGCGGGCCC-GUAG- -5'
14630 5' -57.2 NC_003521.1 + 120964 0.67 0.880268
Target:  5'- ----cUGCGGAcCGAgGCCCGGGUg-- -3'
miRNA:   3'- agaguACGCCU-GUUgCGGGCCCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.