miRNA display CGI


Results 61 - 80 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 85383 0.74 0.397434
Target:  5'- uGCGACUCGCCCAgCGgguCGgCCAGC-UCg -3'
miRNA:   3'- -CGCUGAGCGGGUgGU---GCgGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 96742 0.74 0.397434
Target:  5'- -aGGCagaaGCCCAgCACguuGCCCAGCGCCg -3'
miRNA:   3'- cgCUGag--CGGGUgGUG---CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 25769 0.74 0.405435
Target:  5'- aGCGuccuaaUCGCCUGCCugGCCCugucGCACUu -3'
miRNA:   3'- -CGCug----AGCGGGUGGugCGGGu---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 92925 0.74 0.408664
Target:  5'- aGCGACggCGCCauuuuuccgaucgaaCACCAaaauCCCAGCACCa -3'
miRNA:   3'- -CGCUGa-GCGG---------------GUGGUgc--GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 39436 0.74 0.421738
Target:  5'- uGCcGCU-GCCgGCCGaGCCCGGCGCCg -3'
miRNA:   3'- -CGcUGAgCGGgUGGUgCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123229 0.74 0.421738
Target:  5'- gGCGGCgguagguggUCGUagCGCCGCGCCCAGUagacGCCg -3'
miRNA:   3'- -CGCUG---------AGCGg-GUGGUGCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 63017 0.74 0.421738
Target:  5'- cCGGCggCGCCCACgACGCCCAcCAgCg -3'
miRNA:   3'- cGCUGa-GCGGGUGgUGCGGGUcGUgG- -5'
14631 5' -60.3 NC_003521.1 + 34851 0.74 0.430036
Target:  5'- gGCGAgUgagagcCGCCCACCACGUagaAGCACUg -3'
miRNA:   3'- -CGCUgA------GCGGGUGGUGCGgg-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225489 0.74 0.430036
Target:  5'- cGCGACUgcugcaccagcgCGCUgauCACC-CGCUCGGCGCCg -3'
miRNA:   3'- -CGCUGA------------GCGG---GUGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 100237 0.74 0.430036
Target:  5'- aGCGuCUCGCCgGCCGCGaaauCCUcgggcGGCGCCu -3'
miRNA:   3'- -CGCuGAGCGGgUGGUGC----GGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 197318 0.73 0.437586
Target:  5'- gGCGGCaggCGCugacggauguuggCCGCCGCGgCCAGCACg -3'
miRNA:   3'- -CGCUGa--GCG-------------GGUGGUGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 40488 0.73 0.43843
Target:  5'- cGCGGCgCG-CCACgGCGCCgCAGCGCa -3'
miRNA:   3'- -CGCUGaGCgGGUGgUGCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 135827 0.73 0.446917
Target:  5'- gGCGACgaaCGCUC-CCGUGCCCaugAGCACCg -3'
miRNA:   3'- -CGCUGa--GCGGGuGGUGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43653 0.73 0.446917
Target:  5'- cCGcCUCcaGCCCuGCCAgGCCCAGCGCg -3'
miRNA:   3'- cGCuGAG--CGGG-UGGUgCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 36509 0.73 0.450337
Target:  5'- aCGACUggagcaacaucgugaCGCCCAaauCGUCCAGCGCCg -3'
miRNA:   3'- cGCUGA---------------GCGGGUgguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 207623 0.73 0.455493
Target:  5'- gGCGGCUCGCCgGCC-UGCaCCuuCACCu -3'
miRNA:   3'- -CGCUGAGCGGgUGGuGCG-GGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 142550 0.73 0.455493
Target:  5'- aGUGACggcuugUCGCCCGCCAggcuCGCCguGCccGCCg -3'
miRNA:   3'- -CGCUG------AGCGGGUGGU----GCGGguCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 167967 0.73 0.455493
Target:  5'- aCGAC-CGCCgugccuaccguCGCCGCGCCCAG-GCCg -3'
miRNA:   3'- cGCUGaGCGG-----------GUGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 126917 0.73 0.464159
Target:  5'- cUGGCUCGCUCGCgaACGCCCuuuauGCugCg -3'
miRNA:   3'- cGCUGAGCGGGUGg-UGCGGGu----CGugG- -5'
14631 5' -60.3 NC_003521.1 + 87915 0.73 0.464159
Target:  5'- aCGACUCcuggcuGgCCGCCGCGCCgGGCAUg -3'
miRNA:   3'- cGCUGAG------CgGGUGGUGCGGgUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.