miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 3' -64.2 NC_003521.1 + 115655 0.66 0.699912
Target:  5'- -uGUCGgcgCCCCAGuGGCGGGUgaagaagGcGGCCa -3'
miRNA:   3'- cuCGGCa--GGGGUC-CCGCUCAg------C-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 118533 0.66 0.699912
Target:  5'- aAGCCGggauUCCCCAc-GCGGcUUGGGCCg -3'
miRNA:   3'- cUCGGC----AGGGGUccCGCUcAGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 35018 0.66 0.699912
Target:  5'- -cGUCGUgCCCGGcGGaCGcGGUUGGGCa -3'
miRNA:   3'- cuCGGCAgGGGUC-CC-GC-UCAGCCCGg -5'
14633 3' -64.2 NC_003521.1 + 119930 0.66 0.699912
Target:  5'- cAGCCGcCCCCGaccaccugcacGGGCGuGaugacgCGcGGCCg -3'
miRNA:   3'- cUCGGCaGGGGU-----------CCCGCuCa-----GC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 149417 0.66 0.694383
Target:  5'- cGGUCGcCCUguGGGCcgggauuugggucggGGGUCcGGGCCc -3'
miRNA:   3'- cUCGGCaGGGguCCCG---------------CUCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 169282 0.66 0.690689
Target:  5'- -cGUCGUCUUCGGcGGCGGGcUCGGugacgucgGCCg -3'
miRNA:   3'- cuCGGCAGGGGUC-CCGCUC-AGCC--------CGG- -5'
14633 3' -64.2 NC_003521.1 + 175779 0.66 0.690689
Target:  5'- aGGCgCGUCauuagCCGGGGCugcacgCGGGCCa -3'
miRNA:   3'- cUCG-GCAGg----GGUCCCGcuca--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 197837 0.66 0.690689
Target:  5'- cGGCCGUCUgCAggucgucgguGGGCGccGG-CGGGUCg -3'
miRNA:   3'- cUCGGCAGGgGU----------CCCGC--UCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 135363 0.66 0.690689
Target:  5'- -cGCCGUCUCCGcGGCG-GUuaucgcccgCGGGCg -3'
miRNA:   3'- cuCGGCAGGGGUcCCGCuCA---------GCCCGg -5'
14633 3' -64.2 NC_003521.1 + 113341 0.66 0.681424
Target:  5'- -cGCCGgggggCuUCCAGGGgGA--CGGGCCg -3'
miRNA:   3'- cuCGGCa----G-GGGUCCCgCUcaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 6046 0.66 0.681424
Target:  5'- aAGCCGUgCCCCAGcGGCcccgcaGGGCg -3'
miRNA:   3'- cUCGGCA-GGGGUC-CCGcucag-CCCGg -5'
14633 3' -64.2 NC_003521.1 + 215030 0.66 0.672125
Target:  5'- aGAGCCGUCUCguGaaaguGCGAca-GGGCCa -3'
miRNA:   3'- -CUCGGCAGGGguCc----CGCUcagCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 135765 0.66 0.672125
Target:  5'- uGGGaUCGcCCCUGGGGCugcucgcgcacGGG-CGGGCCg -3'
miRNA:   3'- -CUC-GGCaGGGGUCCCG-----------CUCaGCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 155488 0.66 0.672125
Target:  5'- -cGCCGg-CCUGcGGCGGGccgCGGGCCa -3'
miRNA:   3'- cuCGGCagGGGUcCCGCUCa--GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 102839 0.66 0.672125
Target:  5'- cGAGaaGcgCgCCAGGGCGcccguggcguaGGUCuGGGCCg -3'
miRNA:   3'- -CUCggCa-GgGGUCCCGC-----------UCAG-CCCGG- -5'
14633 3' -64.2 NC_003521.1 + 142770 0.66 0.6628
Target:  5'- cAG-CGUCCgCGGcGGCGucGUCGGuGCCa -3'
miRNA:   3'- cUCgGCAGGgGUC-CCGCu-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 39379 0.66 0.6628
Target:  5'- aGGCUGUCUgacgguaaggCGGGGCGAuGUUGGaGCCg -3'
miRNA:   3'- cUCGGCAGGg---------GUCCCGCU-CAGCC-CGG- -5'
14633 3' -64.2 NC_003521.1 + 77010 0.66 0.6628
Target:  5'- -cGCCGUCCa-GGGGCagcaugcGGUUGaGGCCg -3'
miRNA:   3'- cuCGGCAGGggUCCCGc------UCAGC-CCGG- -5'
14633 3' -64.2 NC_003521.1 + 115713 0.66 0.659063
Target:  5'- cAG-CGUgCCCAGGGagaaGAGgauguugccguugCGGGCCa -3'
miRNA:   3'- cUCgGCAgGGGUCCCg---CUCa------------GCCCGG- -5'
14633 3' -64.2 NC_003521.1 + 223665 0.66 0.653453
Target:  5'- cGGCCccGUUggCCAGGGaGGGUCGGGCg -3'
miRNA:   3'- cUCGG--CAGg-GGUCCCgCUCAGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.