Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14633 | 5' | -52.1 | NC_003521.1 | + | 54637 | 0.66 | 0.997242 |
Target: 5'- cACGGCCGAguuCUCGCUcucgcgcacGAUGUCcUGg -3' miRNA: 3'- -UGCCGGCU---GAGCGGcuu------UUACAGaAC- -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 148646 | 0.66 | 0.997242 |
Target: 5'- aACGGCCccgaGCUCGgCGggGAUGg---- -3' miRNA: 3'- -UGCCGGc---UGAGCgGCuuUUACagaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 165693 | 0.66 | 0.996761 |
Target: 5'- -aGGUCGGC-CGCCGAAAGccGUCc-- -3' miRNA: 3'- ugCCGGCUGaGCGGCUUUUa-CAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 117081 | 0.66 | 0.996603 |
Target: 5'- cCGGCCGGCcuucUCGCUGuuccccgcgcguccGGGAUGUCa-- -3' miRNA: 3'- uGCCGGCUG----AGCGGC--------------UUUUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 84924 | 0.66 | 0.99644 |
Target: 5'- cCGGCCuGCUCGCagggcgugcgcucgaUGAAGGUGUCc-- -3' miRNA: 3'- uGCCGGcUGAGCG---------------GCUUUUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 52759 | 0.66 | 0.996211 |
Target: 5'- -aGGCCGcACUCGUuaaccaggaUGGAGAUGUCc-- -3' miRNA: 3'- ugCCGGC-UGAGCG---------GCUUUUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 81113 | 0.66 | 0.996211 |
Target: 5'- gAUGGCCGAgaggaUgGCCGAAGGguUGaUCUUGc -3' miRNA: 3'- -UGCCGGCUg----AgCGGCUUUU--AC-AGAAC- -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 234453 | 0.66 | 0.996211 |
Target: 5'- -gGGCCGACcucCGCUcuGAGUGUCUc- -3' miRNA: 3'- ugCCGGCUGa--GCGGcuUUUACAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 214731 | 0.66 | 0.996211 |
Target: 5'- cUGGCCGACU--CCGGAGccGUCUa- -3' miRNA: 3'- uGCCGGCUGAgcGGCUUUuaCAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 90583 | 0.66 | 0.996211 |
Target: 5'- -aGGCCGACgugacgUGCuCGGAGAUGUa--- -3' miRNA: 3'- ugCCGGCUGa-----GCG-GCUUUUACAgaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 109510 | 0.66 | 0.996211 |
Target: 5'- cACGGCCagguGACgcCGCCGAcgGUGUUc-- -3' miRNA: 3'- -UGCCGG----CUGa-GCGGCUuuUACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 206758 | 0.66 | 0.995588 |
Target: 5'- uGCcGCCGACuaUCGCCGAuuAUcGUCg-- -3' miRNA: 3'- -UGcCGGCUG--AGCGGCUuuUA-CAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 120592 | 0.66 | 0.994884 |
Target: 5'- cGCGGCCGccgGCUCcuGCCGguAGcGUCUg- -3' miRNA: 3'- -UGCCGGC---UGAG--CGGCuuUUaCAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 117483 | 0.66 | 0.994884 |
Target: 5'- cACGGCCG-CggCGCUGggGccGUCg-- -3' miRNA: 3'- -UGCCGGCuGa-GCGGCuuUuaCAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 125604 | 0.66 | 0.994091 |
Target: 5'- uGCGuGuCCGugUCGCCGcgGAUGcagucCUUGg -3' miRNA: 3'- -UGC-C-GGCugAGCGGCuuUUACa----GAAC- -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 70107 | 0.66 | 0.994091 |
Target: 5'- cUGGCCGGCgugcCGCCGAAGGgccgCUa- -3' miRNA: 3'- uGCCGGCUGa---GCGGCUUUUaca-GAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 23844 | 0.66 | 0.994091 |
Target: 5'- -aGGCCGACcUGCUGGcgcuGUGUCUc- -3' miRNA: 3'- ugCCGGCUGaGCGGCUuu--UACAGAac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 78212 | 0.67 | 0.993202 |
Target: 5'- cGCGGC--GCUCGUCGGAGGcUGUCg-- -3' miRNA: 3'- -UGCCGgcUGAGCGGCUUUU-ACAGaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 74580 | 0.67 | 0.993202 |
Target: 5'- cACGGCCcGCUCGCCGGGc-------- -3' miRNA: 3'- -UGCCGGcUGAGCGGCUUuuacagaac -5' |
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14633 | 5' | -52.1 | NC_003521.1 | + | 58952 | 0.67 | 0.992209 |
Target: 5'- uCGGCgaGCUCGCCGAGGG-GUCg-- -3' miRNA: 3'- uGCCGgcUGAGCGGCUUUUaCAGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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