miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 5' -52.1 NC_003521.1 + 23844 0.66 0.994091
Target:  5'- -aGGCCGACcUGCUGGcgcuGUGUCUc- -3'
miRNA:   3'- ugCCGGCUGaGCGGCUuu--UACAGAac -5'
14633 5' -52.1 NC_003521.1 + 27570 0.67 0.990987
Target:  5'- gGCGGUCGACgCGUCGGAcuccgauGcgGUCUg- -3'
miRNA:   3'- -UGCCGGCUGaGCGGCUU-------UuaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 34223 0.69 0.966186
Target:  5'- gACGGCgccCGugUCGCCGcAGAGgaUCUUGa -3'
miRNA:   3'- -UGCCG---GCugAGCGGC-UUUUacAGAAC- -5'
14633 5' -52.1 NC_003521.1 + 43867 0.67 0.992208
Target:  5'- cCGGCCGGCUC-CCGGGcc-GUCg-- -3'
miRNA:   3'- uGCCGGCUGAGcGGCUUuuaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 44460 0.68 0.987037
Target:  5'- gGCGGUgGAagugUUCGCCGAGAAccUGUCc-- -3'
miRNA:   3'- -UGCCGgCU----GAGCGGCUUUU--ACAGaac -5'
14633 5' -52.1 NC_003521.1 + 50450 0.69 0.974785
Target:  5'- aGCGGUgGACggaGCCGAAAgccgcGUGUCggUGa -3'
miRNA:   3'- -UGCCGgCUGag-CGGCUUU-----UACAGa-AC- -5'
14633 5' -52.1 NC_003521.1 + 52759 0.66 0.996211
Target:  5'- -aGGCCGcACUCGUuaaccaggaUGGAGAUGUCc-- -3'
miRNA:   3'- ugCCGGC-UGAGCG---------GCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 53170 0.71 0.917703
Target:  5'- cGCGGCCGccCUCGCCGAugaAGAUGg---- -3'
miRNA:   3'- -UGCCGGCu-GAGCGGCU---UUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 54637 0.66 0.997242
Target:  5'- cACGGCCGAguuCUCGCUcucgcgcacGAUGUCcUGg -3'
miRNA:   3'- -UGCCGGCU---GAGCGGcuu------UUACAGaAC- -5'
14633 5' -52.1 NC_003521.1 + 55769 0.71 0.943207
Target:  5'- cGCGGCCGGCgguacaGCuCGAAGAUGaaCUUGc -3'
miRNA:   3'- -UGCCGGCUGag----CG-GCUUUUACa-GAAC- -5'
14633 5' -52.1 NC_003521.1 + 58952 0.67 0.992209
Target:  5'- uCGGCgaGCUCGCCGAGGG-GUCg-- -3'
miRNA:   3'- uGCCGgcUGAGCGGCUUUUaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 70107 0.66 0.994091
Target:  5'- cUGGCCGGCgugcCGCCGAAGGgccgCUa- -3'
miRNA:   3'- uGCCGGCUGa---GCGGCUUUUaca-GAac -5'
14633 5' -52.1 NC_003521.1 + 74580 0.67 0.993202
Target:  5'- cACGGCCcGCUCGCCGGGc-------- -3'
miRNA:   3'- -UGCCGGcUGAGCGGCUUuuacagaac -5'
14633 5' -52.1 NC_003521.1 + 75830 0.73 0.879374
Target:  5'- uGCGGCCGAuCUCGCCcucggGAAGAUGg---- -3'
miRNA:   3'- -UGCCGGCU-GAGCGG-----CUUUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 78212 0.67 0.993202
Target:  5'- cGCGGC--GCUCGUCGGAGGcUGUCg-- -3'
miRNA:   3'- -UGCCGgcUGAGCGGCUUUU-ACAGaac -5'
14633 5' -52.1 NC_003521.1 + 81113 0.66 0.996211
Target:  5'- gAUGGCCGAgaggaUgGCCGAAGGguUGaUCUUGc -3'
miRNA:   3'- -UGCCGGCUg----AgCGGCUUUU--AC-AGAAC- -5'
14633 5' -52.1 NC_003521.1 + 84924 0.66 0.99644
Target:  5'- cCGGCCuGCUCGCagggcgugcgcucgaUGAAGGUGUCc-- -3'
miRNA:   3'- uGCCGGcUGAGCG---------------GCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 85967 0.68 0.983616
Target:  5'- -aGGCCGcACUCGUCGAugacgauGAUGUUg-- -3'
miRNA:   3'- ugCCGGC-UGAGCGGCUu------UUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 90583 0.66 0.996211
Target:  5'- -aGGCCGACgugacgUGCuCGGAGAUGUa--- -3'
miRNA:   3'- ugCCGGCUGa-----GCG-GCUUUUACAgaac -5'
14633 5' -52.1 NC_003521.1 + 97389 0.7 0.959416
Target:  5'- aGCGGCCaGAcCUCGCCGAAGGaGcCcUGg -3'
miRNA:   3'- -UGCCGG-CU-GAGCGGCUUUUaCaGaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.