miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 5' -52.1 NC_003521.1 + 234453 0.66 0.996211
Target:  5'- -gGGCCGACcucCGCUcuGAGUGUCUc- -3'
miRNA:   3'- ugCCGGCUGa--GCGGcuUUUACAGAac -5'
14633 5' -52.1 NC_003521.1 + 229099 1.09 0.010905
Target:  5'- gACGGCCGACUCGCCGAAAAUGUCUUGa -3'
miRNA:   3'- -UGCCGGCUGAGCGGCUUUUACAGAAC- -5'
14633 5' -52.1 NC_003521.1 + 214731 0.66 0.996211
Target:  5'- cUGGCCGACU--CCGGAGccGUCUa- -3'
miRNA:   3'- uGCCGGCUGAgcGGCUUUuaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 211585 0.67 0.99156
Target:  5'- cGCGGCgGugUCcCCGGAgacguccugcagcggGAUGUCUUc -3'
miRNA:   3'- -UGCCGgCugAGcGGCUU---------------UUACAGAAc -5'
14633 5' -52.1 NC_003521.1 + 206758 0.66 0.995588
Target:  5'- uGCcGCCGACuaUCGCCGAuuAUcGUCg-- -3'
miRNA:   3'- -UGcCGGCUG--AGCGGCUuuUA-CAGaac -5'
14633 5' -52.1 NC_003521.1 + 197385 0.67 0.991104
Target:  5'- -aGGCUcuGGCUCGCCGcccgggacuGGGUGUCUg- -3'
miRNA:   3'- ugCCGG--CUGAGCGGCu--------UUUACAGAac -5'
14633 5' -52.1 NC_003521.1 + 182179 0.67 0.992208
Target:  5'- gACGGCCGGCgCGUgGGGAuucagacacuugGUGcUCUUGu -3'
miRNA:   3'- -UGCCGGCUGaGCGgCUUU------------UAC-AGAAC- -5'
14633 5' -52.1 NC_003521.1 + 172290 0.71 0.938578
Target:  5'- gGCGGCCGcuGC-CGCCGuccGGUGUCggUGg -3'
miRNA:   3'- -UGCCGGC--UGaGCGGCuu-UUACAGa-AC- -5'
14633 5' -52.1 NC_003521.1 + 172113 0.68 0.981669
Target:  5'- gGCGGCCGACggCGCC---AcgGUCaUGa -3'
miRNA:   3'- -UGCCGGCUGa-GCGGcuuUuaCAGaAC- -5'
14633 5' -52.1 NC_003521.1 + 172100 0.7 0.962908
Target:  5'- gGCGGCCGACUCGUaaaugggcagcaUGAAAcUGcUCUg- -3'
miRNA:   3'- -UGCCGGCUGAGCG------------GCUUUuAC-AGAac -5'
14633 5' -52.1 NC_003521.1 + 170294 0.67 0.992209
Target:  5'- uCGGCCGGCcgaGCgCGAGGcgGUCa-- -3'
miRNA:   3'- uGCCGGCUGag-CG-GCUUUuaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 165949 0.71 0.923277
Target:  5'- -aGGUCGggguGCUCGCgGAAGAUGUCg-- -3'
miRNA:   3'- ugCCGGC----UGAGCGgCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 165693 0.66 0.996761
Target:  5'- -aGGUCGGC-CGCCGAAAGccGUCc-- -3'
miRNA:   3'- ugCCGGCUGaGCGGCUUUUa-CAGaac -5'
14633 5' -52.1 NC_003521.1 + 164855 0.68 0.981669
Target:  5'- -gGGCCGcucCUCGUCGggGGUGUgUa- -3'
miRNA:   3'- ugCCGGCu--GAGCGGCuuUUACAgAac -5'
14633 5' -52.1 NC_003521.1 + 163959 0.68 0.985403
Target:  5'- uCGGCCG-CggaCGCCGAAGAUGg---- -3'
miRNA:   3'- uGCCGGCuGa--GCGGCUUUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 161554 0.72 0.88633
Target:  5'- gACGGggugcucuucuUCGACUCGCCGGAGaacGUGUCg-- -3'
miRNA:   3'- -UGCC-----------GGCUGAGCGGCUUU---UACAGaac -5'
14633 5' -52.1 NC_003521.1 + 148646 0.66 0.997242
Target:  5'- aACGGCCccgaGCUCGgCGggGAUGg---- -3'
miRNA:   3'- -UGCCGGc---UGAGCgGCuuUUACagaac -5'
14633 5' -52.1 NC_003521.1 + 140213 0.71 0.928614
Target:  5'- gGCGGCCGAgUCGCCGugcagcauGAUGgcggCUc- -3'
miRNA:   3'- -UGCCGGCUgAGCGGCuu------UUACa---GAac -5'
14633 5' -52.1 NC_003521.1 + 125604 0.66 0.994091
Target:  5'- uGCGuGuCCGugUCGCCGcgGAUGcagucCUUGg -3'
miRNA:   3'- -UGC-C-GGCugAGCGGCuuUUACa----GAAC- -5'
14633 5' -52.1 NC_003521.1 + 120795 0.67 0.992208
Target:  5'- cACGGCCGGgUUGCUGcugucGAUGUCc-- -3'
miRNA:   3'- -UGCCGGCUgAGCGGCuu---UUACAGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.