miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14633 5' -52.1 NC_003521.1 + 161554 0.72 0.88633
Target:  5'- gACGGggugcucuucuUCGACUCGCCGGAGaacGUGUCg-- -3'
miRNA:   3'- -UGCC-----------GGCUGAGCGGCUUU---UACAGaac -5'
14633 5' -52.1 NC_003521.1 + 109510 0.66 0.996211
Target:  5'- cACGGCCagguGACgcCGCCGAcgGUGUUc-- -3'
miRNA:   3'- -UGCCGG----CUGa-GCGGCUuuUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 214731 0.66 0.996211
Target:  5'- cUGGCCGACU--CCGGAGccGUCUa- -3'
miRNA:   3'- uGCCGGCUGAgcGGCUUUuaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 117081 0.66 0.996603
Target:  5'- cCGGCCGGCcuucUCGCUGuuccccgcgcguccGGGAUGUCa-- -3'
miRNA:   3'- uGCCGGCUG----AGCGGC--------------UUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 97389 0.7 0.959416
Target:  5'- aGCGGCCaGAcCUCGCCGAAGGaGcCcUGg -3'
miRNA:   3'- -UGCCGG-CU-GAGCGGCUUUUaCaGaAC- -5'
14633 5' -52.1 NC_003521.1 + 104218 0.68 0.979553
Target:  5'- uCGGCCucCUCGCaCGAGAGUGcCgagUGa -3'
miRNA:   3'- uGCCGGcuGAGCG-GCUUUUACaGa--AC- -5'
14633 5' -52.1 NC_003521.1 + 172113 0.68 0.981669
Target:  5'- gGCGGCCGACggCGCC---AcgGUCaUGa -3'
miRNA:   3'- -UGCCGGCUGa-GCGGcuuUuaCAGaAC- -5'
14633 5' -52.1 NC_003521.1 + 85967 0.68 0.983616
Target:  5'- -aGGCCGcACUCGUCGAugacgauGAUGUUg-- -3'
miRNA:   3'- ugCCGGC-UGAGCGGCUu------UUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 74580 0.67 0.993202
Target:  5'- cACGGCCcGCUCGCCGGGc-------- -3'
miRNA:   3'- -UGCCGGcUGAGCGGCUUuuacagaac -5'
14633 5' -52.1 NC_003521.1 + 23844 0.66 0.994091
Target:  5'- -aGGCCGACcUGCUGGcgcuGUGUCUc- -3'
miRNA:   3'- ugCCGGCUGaGCGGCUuu--UACAGAac -5'
14633 5' -52.1 NC_003521.1 + 170294 0.67 0.992209
Target:  5'- uCGGCCGGCcgaGCgCGAGGcgGUCa-- -3'
miRNA:   3'- uGCCGGCUGag-CG-GCUUUuaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 165949 0.71 0.923277
Target:  5'- -aGGUCGggguGCUCGCgGAAGAUGUCg-- -3'
miRNA:   3'- ugCCGGC----UGAGCGgCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 117483 0.66 0.994884
Target:  5'- cACGGCCG-CggCGCUGggGccGUCg-- -3'
miRNA:   3'- -UGCCGGCuGa-GCGGCuuUuaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 172290 0.71 0.938578
Target:  5'- gGCGGCCGcuGC-CGCCGuccGGUGUCggUGg -3'
miRNA:   3'- -UGCCGGC--UGaGCGGCuu-UUACAGa-AC- -5'
14633 5' -52.1 NC_003521.1 + 58952 0.67 0.992209
Target:  5'- uCGGCgaGCUCGCCGAGGG-GUCg-- -3'
miRNA:   3'- uGCCGgcUGAGCGGCUUUUaCAGaac -5'
14633 5' -52.1 NC_003521.1 + 90583 0.66 0.996211
Target:  5'- -aGGCCGACgugacgUGCuCGGAGAUGUa--- -3'
miRNA:   3'- ugCCGGCUGa-----GCG-GCUUUUACAgaac -5'
14633 5' -52.1 NC_003521.1 + 84924 0.66 0.99644
Target:  5'- cCGGCCuGCUCGCagggcgugcgcucgaUGAAGGUGUCc-- -3'
miRNA:   3'- uGCCGGcUGAGCG---------------GCUUUUACAGaac -5'
14633 5' -52.1 NC_003521.1 + 119802 0.7 0.947602
Target:  5'- -aGGUCGGCgcCGCCGAGGAgGUCUg- -3'
miRNA:   3'- ugCCGGCUGa-GCGGCUUUUaCAGAac -5'
14633 5' -52.1 NC_003521.1 + 164855 0.68 0.981669
Target:  5'- -gGGCCGcucCUCGUCGggGGUGUgUa- -3'
miRNA:   3'- ugCCGGCu--GAGCGGCuuUUACAgAac -5'
14633 5' -52.1 NC_003521.1 + 78212 0.67 0.993202
Target:  5'- cGCGGC--GCUCGUCGGAGGcUGUCg-- -3'
miRNA:   3'- -UGCCGgcUGAGCGGCUUUU-ACAGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.