miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 231999 1.11 0.015754
Target:  5'- aCACCAUCUCCGAGACCUUUUCUACGGu -3'
miRNA:   3'- -GUGGUAGAGGCUCUGGAAAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 114414 0.75 0.905524
Target:  5'- cCGCCAUCgcgcagggCCGAGACCUgug--GCGGc -3'
miRNA:   3'- -GUGGUAGa-------GGCUCUGGAaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83636 0.74 0.928524
Target:  5'- -cCCAcCUCCGAGACCU--UCUGCa- -3'
miRNA:   3'- guGGUaGAGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 132476 0.74 0.947679
Target:  5'- aGCCGUCUUCgGAGACCgccgUCggcGCGGa -3'
miRNA:   3'- gUGGUAGAGG-CUCUGGaaa-AGa--UGCC- -5'
14634 3' -49.5 NC_003521.1 + 138370 0.74 0.943248
Target:  5'- aCACgGUCUUCGAGAUCUgccgcggcCUGCGGc -3'
miRNA:   3'- -GUGgUAGAGGCUCUGGAaaa-----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 115185 0.72 0.969463
Target:  5'- gACCAUCgaCGAGuACCUg--CUGCGGg -3'
miRNA:   3'- gUGGUAGagGCUC-UGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 106211 0.72 0.977491
Target:  5'- gGCCAUCUCCGAGugC------GCGGc -3'
miRNA:   3'- gUGGUAGAGGCUCugGaaaagaUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145565 0.71 0.981901
Target:  5'- aAUCAUCUUCGccGGACCUccccggcUCUGCGGa -3'
miRNA:   3'- gUGGUAGAGGC--UCUGGAaa-----AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 30168 0.7 0.992392
Target:  5'- gGCCAUgCUCCGcgucuauguggGGAUCU--UCUGCGGu -3'
miRNA:   3'- gUGGUA-GAGGC-----------UCUGGAaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 190209 0.7 0.993374
Target:  5'- gGCCGUCUCaCGGGACCUcccugacUCagAUGGg -3'
miRNA:   3'- gUGGUAGAG-GCUCUGGAaa-----AGa-UGCC- -5'
14634 3' -49.5 NC_003521.1 + 138115 0.7 0.993374
Target:  5'- gCGCCGucuUCUCCGAGACCUg----GCa- -3'
miRNA:   3'- -GUGGU---AGAGGCUCUGGAaaagaUGcc -5'
14634 3' -49.5 NC_003521.1 + 84676 0.7 0.992392
Target:  5'- cCACCGUCgucggaaucgUCCGAGACgacggggUUUCUgACGGg -3'
miRNA:   3'- -GUGGUAG----------AGGCUCUGga-----AAAGA-UGCC- -5'
14634 3' -49.5 NC_003521.1 + 88323 0.7 0.990082
Target:  5'- -cCCAUCcCCGAGGCCUa-UCUGCa- -3'
miRNA:   3'- guGGUAGaGGCUCUGGAaaAGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 17478 0.7 0.990082
Target:  5'- gGCCGcCgCCGAGGCCUggggcaccuaUCUGCGGc -3'
miRNA:   3'- gUGGUaGaGGCUCUGGAaa--------AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 112000 0.7 0.994252
Target:  5'- uCGCCGUCUacgagccccaCCGGGAaaacgUUCUGCGGu -3'
miRNA:   3'- -GUGGUAGA----------GGCUCUggaa-AAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 87738 0.7 0.994252
Target:  5'- uGCCAgacgaagC-CCGAGACCag--CUGCGGa -3'
miRNA:   3'- gUGGUa------GaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 83878 0.7 0.992392
Target:  5'- gACCcaGUCUUCGGGugCa--UCUGCGGg -3'
miRNA:   3'- gUGG--UAGAGGCUCugGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 240541 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 123208 0.69 0.996339
Target:  5'- aCACCggGUCgCUGGGACCcucgCUGCGGu -3'
miRNA:   3'- -GUGG--UAGaGGCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 155373 0.69 0.997348
Target:  5'- aCACCGUCUCUucGACCUgcccgUCUAUu- -3'
miRNA:   3'- -GUGGUAGAGGcuCUGGAaa---AGAUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.