miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14634 3' -49.5 NC_003521.1 + 240541 0.69 0.996877
Target:  5'- gCACaCA-CUCCGAuccGGCCUccgCUGCGGg -3'
miRNA:   3'- -GUG-GUaGAGGCU---CUGGAaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 232388 0.68 0.99891
Target:  5'- cCACCGUCUCgCGcuGGCUgcgcCUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCu-CUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 231999 1.11 0.015754
Target:  5'- aCACCAUCUCCGAGACCUUUUCUACGGu -3'
miRNA:   3'- -GUGGUAGAGGCUCUGGAAAAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 227161 0.66 0.99975
Target:  5'- cCACCcUCUCCGAG-CCUcUUCUcccGCc- -3'
miRNA:   3'- -GUGGuAGAGGCUCuGGAaAAGA---UGcc -5'
14634 3' -49.5 NC_003521.1 + 226924 0.67 0.9994
Target:  5'- -uCgGUCUCguCGAGACCg---CUACGGu -3'
miRNA:   3'- guGgUAGAG--GCUCUGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 219827 0.67 0.999608
Target:  5'- gGCC--CUCCGAGACCcggaUCcagUGCGGg -3'
miRNA:   3'- gUGGuaGAGGCUCUGGaaa-AG---AUGCC- -5'
14634 3' -49.5 NC_003521.1 + 217628 0.66 0.99975
Target:  5'- cCGCCAUCUCCucGGCgUggUCggggggcaugGCGGg -3'
miRNA:   3'- -GUGGUAGAGGcuCUGgAaaAGa---------UGCC- -5'
14634 3' -49.5 NC_003521.1 + 208587 0.68 0.998421
Target:  5'- gCGCUAUCUCaCGGcGACUgagUUUGCGGc -3'
miRNA:   3'- -GUGGUAGAG-GCU-CUGGaaaAGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 201607 0.69 0.996339
Target:  5'- cCGCUGUCcCCGAGcCCgcgcugCUGCGGa -3'
miRNA:   3'- -GUGGUAGaGGCUCuGGaaaa--GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 201380 0.66 0.999803
Target:  5'- uGCCGUCcCCGGGagccacggcGCCgc--CUACGGg -3'
miRNA:   3'- gUGGUAGaGGCUC---------UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 190209 0.7 0.993374
Target:  5'- gGCCGUCUCaCGGGACCUcccugacUCagAUGGg -3'
miRNA:   3'- gUGGUAGAG-GCUCUGGAaa-----AGa-UGCC- -5'
14634 3' -49.5 NC_003521.1 + 171874 0.67 0.999514
Target:  5'- gGCCGUCUCCcGGACCagacgCUA-GGa -3'
miRNA:   3'- gUGGUAGAGGcUCUGGaaaa-GAUgCC- -5'
14634 3' -49.5 NC_003521.1 + 171599 0.67 0.999102
Target:  5'- -cCCGUCUCUcaGAGACCaccacagcCUGCGGu -3'
miRNA:   3'- guGGUAGAGG--CUCUGGaaaa----GAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 163449 0.67 0.999102
Target:  5'- cCACCGUCUUCGAGcCCguggugggCUACu- -3'
miRNA:   3'- -GUGGUAGAGGCUCuGGaaaa----GAUGcc -5'
14634 3' -49.5 NC_003521.1 + 161785 0.69 0.995321
Target:  5'- aCGCCAUgUCUGucacgccggccaccaAGACCUccaUCUACGGc -3'
miRNA:   3'- -GUGGUAgAGGC---------------UCUGGAaa-AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 158720 0.66 0.999849
Target:  5'- aCACCGUCUuuGuGGCCUaucacgaggacagCUACGa -3'
miRNA:   3'- -GUGGUAGAggCuCUGGAaaa----------GAUGCc -5'
14634 3' -49.5 NC_003521.1 + 155373 0.69 0.997348
Target:  5'- aCACCGUCUCUucGACCUgcccgUCUAUu- -3'
miRNA:   3'- -GUGGUAGAGGcuCUGGAaa---AGAUGcc -5'
14634 3' -49.5 NC_003521.1 + 148781 0.68 0.998685
Target:  5'- gGCgGUCgcgCCGAGgaGCCgcggCUGCGGa -3'
miRNA:   3'- gUGgUAGa--GGCUC--UGGaaaaGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145565 0.71 0.981901
Target:  5'- aAUCAUCUUCGccGGACCUccccggcUCUGCGGa -3'
miRNA:   3'- gUGGUAGAGGC--UCUGGAaa-----AGAUGCC- -5'
14634 3' -49.5 NC_003521.1 + 145222 0.67 0.9994
Target:  5'- cCACCAaguUCUaCGAGGCCUUcgUgaGCGGc -3'
miRNA:   3'- -GUGGU---AGAgGCUCUGGAAa-AgaUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.