Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14634 | 5' | -43.3 | NC_003521.1 | + | 137813 | 0.68 | 1 |
Target: 5'- cUACCGUACcGAUGGAgcGAGCCUcacgGGUUUc -3' miRNA: 3'- -AUGGCAUGaUUAUUU--UUCGGG----CUAAA- -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 207700 | 0.68 | 1 |
Target: 5'- cGgCGUGCUGG-AGAAGGCCCGc--- -3' miRNA: 3'- aUgGCAUGAUUaUUUUUCGGGCuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 48064 | 0.67 | 1 |
Target: 5'- gAUCGaGCUGAUGGAcGGCCCGc--- -3' miRNA: 3'- aUGGCaUGAUUAUUUuUCGGGCuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 115908 | 0.67 | 1 |
Target: 5'- cACCGUGCUGAacAcgGGCCCcGUg- -3' miRNA: 3'- aUGGCAUGAUUauUuuUCGGGcUAaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 75895 | 0.67 | 1 |
Target: 5'- cGCCGgag----GAGGGGCCCGGUUg -3' miRNA: 3'- aUGGCaugauuaUUUUUCGGGCUAAa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 239839 | 0.66 | 1 |
Target: 5'- aUGCCGUGCUcguugucGGUGgcgcGGAAGCCCa---- -3' miRNA: 3'- -AUGGCAUGA-------UUAU----UUUUCGGGcuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 124874 | 0.66 | 1 |
Target: 5'- cGCCGUACUGAgccgcAAGAcGCCCc---- -3' miRNA: 3'- aUGGCAUGAUUa----UUUUuCGGGcuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 107470 | 0.66 | 1 |
Target: 5'- gACCGUGCUGAUcuccacGUCCGGc-- -3' miRNA: 3'- aUGGCAUGAUUAuuuuu-CGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 227937 | 0.67 | 1 |
Target: 5'- aUACCGUACcacaugguguaccUGcgGGAAGGCCCGu--- -3' miRNA: 3'- -AUGGCAUG-------------AUuaUUUUUCGGGCuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 44245 | 0.66 | 1 |
Target: 5'- cGCCGUGCgc---GGGAGUCCGGc-- -3' miRNA: 3'- aUGGCAUGauuauUUUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 117700 | 0.69 | 0.999999 |
Target: 5'- cUGCCGUACUucGUAcagcGGCCCGGc-- -3' miRNA: 3'- -AUGGCAUGAu-UAUuuu-UCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 221063 | 0.68 | 0.999999 |
Target: 5'- gACCGagcggugGCUGAaguGGAAGCCCGAc-- -3' miRNA: 3'- aUGGCa------UGAUUau-UUUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 101930 | 0.69 | 0.999998 |
Target: 5'- gGCCGUGgUGGUAGAu-GCCCGu--- -3' miRNA: 3'- aUGGCAUgAUUAUUUuuCGGGCuaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 120958 | 0.69 | 0.999997 |
Target: 5'- aACCG-ACUGcgGAccGAGGCCCGGg-- -3' miRNA: 3'- aUGGCaUGAUuaUU--UUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 39902 | 0.69 | 0.999997 |
Target: 5'- gGCCG-ACUGcgGGAAGGCgCGAUg- -3' miRNA: 3'- aUGGCaUGAUuaUUUUUCGgGCUAaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 98939 | 0.69 | 0.999996 |
Target: 5'- gGCCGUGCgcaucacacuGAGGGCCUGGUg- -3' miRNA: 3'- aUGGCAUGauuau-----UUUUCGGGCUAaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 211559 | 0.7 | 0.99998 |
Target: 5'- -cCCGUACUcAUGAAGAGCgCUGGUc- -3' miRNA: 3'- auGGCAUGAuUAUUUUUCG-GGCUAaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 93745 | 0.71 | 0.999949 |
Target: 5'- aGCCGUcgGCcGAUAcGAAGCCCGGc-- -3' miRNA: 3'- aUGGCA--UGaUUAUuUUUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 87270 | 0.71 | 0.999949 |
Target: 5'- cGCCGUGCgcGUGGccaacGGGCCCGAg-- -3' miRNA: 3'- aUGGCAUGauUAUUu----UUCGGGCUaaa -5' |
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14634 | 5' | -43.3 | NC_003521.1 | + | 148464 | 0.71 | 0.999949 |
Target: 5'- --gCGUGCUGAUGAcgaAAAGCCCGc--- -3' miRNA: 3'- augGCAUGAUUAUU---UUUCGGGCuaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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