Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14635 | 5' | -49.8 | NC_003521.1 | + | 109836 | 0.66 | 0.999768 |
Target: 5'- gCGUCAGGcuGGGUACCgugcucacuGCCCCcaccGCg -3' miRNA: 3'- gGUAGUCUucUCUAUGG---------UGGGGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 172588 | 0.66 | 0.999768 |
Target: 5'- aCCGcCAGguGAacGUACCGCUCCUgcgGCg -3' miRNA: 3'- -GGUaGUCuuCUc-UAUGGUGGGGAa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 227780 | 0.66 | 0.999707 |
Target: 5'- cUCGUCGGAGGAG---UCGCCCCc--- -3' miRNA: 3'- -GGUAGUCUUCUCuauGGUGGGGaacg -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 217019 | 0.66 | 0.999687 |
Target: 5'- -gGUCAGGguuuuccccgggauGGAGAUGCuCACCUCUUcaGUa -3' miRNA: 3'- ggUAGUCU--------------UCUCUAUG-GUGGGGAA--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 61488 | 0.66 | 0.999544 |
Target: 5'- aCA-CGGAAGAGAUcaGCCGCUaCUcGCg -3' miRNA: 3'- gGUaGUCUUCUCUA--UGGUGGgGAaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 193891 | 0.66 | 0.999436 |
Target: 5'- gCCA--GGAGGGGAUACCGuuCCUa-- -3' miRNA: 3'- -GGUagUCUUCUCUAUGGUggGGAacg -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 143323 | 0.66 | 0.999436 |
Target: 5'- gCCcgCGGuAGAGAcaGCCGCCaCCgaugGCg -3' miRNA: 3'- -GGuaGUCuUCUCUa-UGGUGG-GGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 117278 | 0.66 | 0.999436 |
Target: 5'- gUCGUCGGccGuGGUGCCGgcuCCCCUcacgcUGCc -3' miRNA: 3'- -GGUAGUCuuCuCUAUGGU---GGGGA-----ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 178866 | 0.66 | 0.999436 |
Target: 5'- gUCAgcgggCAGuAGAGcgagGCCGCCUgUUGCg -3' miRNA: 3'- -GGUa----GUCuUCUCua--UGGUGGGgAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 127221 | 0.67 | 0.999306 |
Target: 5'- gCAUgAGcAGAGc-GCCGCCCCcgUUGCc -3' miRNA: 3'- gGUAgUCuUCUCuaUGGUGGGG--AACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 213520 | 0.67 | 0.999306 |
Target: 5'- aCGUCaAGGccuGGAGcUACUACCUCUgcUGCg -3' miRNA: 3'- gGUAG-UCU---UCUCuAUGGUGGGGA--ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 172540 | 0.67 | 0.998968 |
Target: 5'- aCCGUCAGGcgGGGGAUcucguGCCGCuguCCCggggucgGCg -3' miRNA: 3'- -GGUAGUCU--UCUCUA-----UGGUG---GGGaa-----CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 166228 | 0.67 | 0.998968 |
Target: 5'- gCUggUAGAAGAgcguGAUGCCGCCCg--GCg -3' miRNA: 3'- -GGuaGUCUUCU----CUAUGGUGGGgaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 171956 | 0.67 | 0.998752 |
Target: 5'- aCCAcUAGAGGAGGgaacgugcuCCAUCCCUUa- -3' miRNA: 3'- -GGUaGUCUUCUCUau-------GGUGGGGAAcg -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 71126 | 0.67 | 0.998752 |
Target: 5'- aCGUCGGggGAcucgucGCCGCCuCCUccucUGCu -3' miRNA: 3'- gGUAGUCuuCUcua---UGGUGG-GGA----ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 217582 | 0.67 | 0.998752 |
Target: 5'- aUCAUCAGGAccccGGGU-CCGCCCCggaccaGCa -3' miRNA: 3'- -GGUAGUCUUc---UCUAuGGUGGGGaa----CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 203268 | 0.67 | 0.998752 |
Target: 5'- aCAUCuacGAGGAGAUuccGCCgcgACCCCcgcUGCc -3' miRNA: 3'- gGUAGu--CUUCUCUA---UGG---UGGGGa--ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 88438 | 0.67 | 0.998498 |
Target: 5'- aCCGcCAGAugacuagaguAGAGGgcgcGCCGCCCCggccgGCc -3' miRNA: 3'- -GGUaGUCU----------UCUCUa---UGGUGGGGaa---CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 187071 | 0.67 | 0.998498 |
Target: 5'- uCCGUCAGcuucuccucgaGGGGGAcgacUACCuCCCCUccGCg -3' miRNA: 3'- -GGUAGUC-----------UUCUCU----AUGGuGGGGAa-CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 188628 | 0.67 | 0.998498 |
Target: 5'- aCUGUCuGAuGAGcucGCCGCCCCggcgGCa -3' miRNA: 3'- -GGUAGuCUuCUCua-UGGUGGGGaa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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