miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14635 5' -49.8 NC_003521.1 + 227780 0.66 0.999707
Target:  5'- cUCGUCGGAGGAG---UCGCCCCc--- -3'
miRNA:   3'- -GGUAGUCUUCUCuauGGUGGGGaacg -5'
14635 5' -49.8 NC_003521.1 + 171956 0.67 0.998752
Target:  5'- aCCAcUAGAGGAGGgaacgugcuCCAUCCCUUa- -3'
miRNA:   3'- -GGUaGUCUUCUCUau-------GGUGGGGAAcg -5'
14635 5' -49.8 NC_003521.1 + 203268 0.67 0.998752
Target:  5'- aCAUCuacGAGGAGAUuccGCCgcgACCCCcgcUGCc -3'
miRNA:   3'- gGUAGu--CUUCUCUA---UGG---UGGGGa--ACG- -5'
14635 5' -49.8 NC_003521.1 + 217582 0.67 0.998752
Target:  5'- aUCAUCAGGAccccGGGU-CCGCCCCggaccaGCa -3'
miRNA:   3'- -GGUAGUCUUc---UCUAuGGUGGGGaa----CG- -5'
14635 5' -49.8 NC_003521.1 + 71126 0.67 0.998752
Target:  5'- aCGUCGGggGAcucgucGCCGCCuCCUccucUGCu -3'
miRNA:   3'- gGUAGUCuuCUcua---UGGUGG-GGA----ACG- -5'
14635 5' -49.8 NC_003521.1 + 166228 0.67 0.998968
Target:  5'- gCUggUAGAAGAgcguGAUGCCGCCCg--GCg -3'
miRNA:   3'- -GGuaGUCUUCU----CUAUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 178866 0.66 0.999436
Target:  5'- gUCAgcgggCAGuAGAGcgagGCCGCCUgUUGCg -3'
miRNA:   3'- -GGUa----GUCuUCUCua--UGGUGGGgAACG- -5'
14635 5' -49.8 NC_003521.1 + 117278 0.66 0.999436
Target:  5'- gUCGUCGGccGuGGUGCCGgcuCCCCUcacgcUGCc -3'
miRNA:   3'- -GGUAGUCuuCuCUAUGGU---GGGGA-----ACG- -5'
14635 5' -49.8 NC_003521.1 + 61488 0.66 0.999544
Target:  5'- aCA-CGGAAGAGAUcaGCCGCUaCUcGCg -3'
miRNA:   3'- gGUaGUCUUCUCUA--UGGUGGgGAaCG- -5'
14635 5' -49.8 NC_003521.1 + 187071 0.67 0.998498
Target:  5'- uCCGUCAGcuucuccucgaGGGGGAcgacUACCuCCCCUccGCg -3'
miRNA:   3'- -GGUAGUC-----------UUCUCU----AUGGuGGGGAa-CG- -5'
14635 5' -49.8 NC_003521.1 + 71270 0.68 0.997007
Target:  5'- aCAUCGGcGGAGGcggggGCCgcggcacggGCCCCUgggGCa -3'
miRNA:   3'- gGUAGUCuUCUCUa----UGG---------UGGGGAa--CG- -5'
14635 5' -49.8 NC_003521.1 + 75808 0.68 0.997007
Target:  5'- aCCAUgCuGAGGA---ACCugUCCUUGCg -3'
miRNA:   3'- -GGUA-GuCUUCUcuaUGGugGGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 98994 0.79 0.74129
Target:  5'- gCGUCAGggGAGGUACCGCggucgUCUUGUa -3'
miRNA:   3'- gGUAGUCuuCUCUAUGGUGg----GGAACG- -5'
14635 5' -49.8 NC_003521.1 + 201010 0.74 0.929363
Target:  5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3'
miRNA:   3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 235642 0.71 0.984249
Target:  5'- -aGUUGGGAGGGGUgcacccucGCCGCCCCUUuCg -3'
miRNA:   3'- ggUAGUCUUCUCUA--------UGGUGGGGAAcG- -5'
14635 5' -49.8 NC_003521.1 + 123401 0.7 0.986003
Target:  5'- gCCGcgCGGAcccGAGAUGCCGCCCUccacccggUGCc -3'
miRNA:   3'- -GGUa-GUCUu--CUCUAUGGUGGGGa-------ACG- -5'
14635 5' -49.8 NC_003521.1 + 88394 0.69 0.992638
Target:  5'- aCGUCGGGcacguAGAG--GCCGCgCUCUUGCa -3'
miRNA:   3'- gGUAGUCU-----UCUCuaUGGUG-GGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 90559 0.69 0.993598
Target:  5'- aCC-UgGGAGGAGuggGUACCGCCCCcuagGUa -3'
miRNA:   3'- -GGuAgUCUUCUC---UAUGGUGGGGaa--CG- -5'
14635 5' -49.8 NC_003521.1 + 239845 0.69 0.994997
Target:  5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3'
miRNA:   3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5'
14635 5' -49.8 NC_003521.1 + 169050 0.69 0.995216
Target:  5'- gUCGUCcGggGGGAUGCgCAagagaCCCUucUGCg -3'
miRNA:   3'- -GGUAGuCuuCUCUAUG-GUg----GGGA--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.