Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14635 | 5' | -49.8 | NC_003521.1 | + | 783 | 0.74 | 0.929363 |
Target: 5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3' miRNA: 3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 188628 | 0.67 | 0.998498 |
Target: 5'- aCUGUCuGAuGAGcucGCCGCCCCggcgGCa -3' miRNA: 3'- -GGUAGuCUuCUCua-UGGUGGGGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 149233 | 0.69 | 0.99589 |
Target: 5'- cCCAUCGGcaccucGuGAcccacacACCGCCCCUUGUg -3' miRNA: 3'- -GGUAGUCuu----CuCUa------UGGUGGGGAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 39618 | 0.69 | 0.994997 |
Target: 5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3' miRNA: 3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 139661 | 0.7 | 0.991567 |
Target: 5'- gCCGUCuGAGGAGAgggacgcagACCGCgCCgcGCu -3' miRNA: 3'- -GGUAGuCUUCUCUa--------UGGUGgGGaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 72507 | 0.71 | 0.984249 |
Target: 5'- aCAUCuucGAGGAGGUGgCGCgCCUcaUGCg -3' miRNA: 3'- gGUAGu--CUUCUCUAUgGUGgGGA--ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 217019 | 0.66 | 0.999687 |
Target: 5'- -gGUCAGGguuuuccccgggauGGAGAUGCuCACCUCUUcaGUa -3' miRNA: 3'- ggUAGUCU--------------UCUCUAUG-GUGGGGAA--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 193891 | 0.66 | 0.999436 |
Target: 5'- gCCA--GGAGGGGAUACCGuuCCUa-- -3' miRNA: 3'- -GGUagUCUUCUCUAUGGUggGGAacg -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 127221 | 0.67 | 0.999306 |
Target: 5'- gCAUgAGcAGAGc-GCCGCCCCcgUUGCc -3' miRNA: 3'- gGUAgUCuUCUCuaUGGUGGGG--AACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 88438 | 0.67 | 0.998498 |
Target: 5'- aCCGcCAGAugacuagaguAGAGGgcgcGCCGCCCCggccgGCc -3' miRNA: 3'- -GGUaGUCU----------UCUCUa---UGGUGGGGaa---CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 150177 | 0.69 | 0.992638 |
Target: 5'- uCCAcUAGggGguguaccuAGGUACCGCCCCUccgggGUa -3' miRNA: 3'- -GGUaGUCuuC--------UCUAUGGUGGGGAa----CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 50460 | 0.74 | 0.934492 |
Target: 5'- aCGUCGGAggagacGGAGAUGCUGCCCg--GCg -3' miRNA: 3'- gGUAGUCU------UCUCUAUGGUGGGgaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 213520 | 0.67 | 0.999306 |
Target: 5'- aCGUCaAGGccuGGAGcUACUACCUCUgcUGCg -3' miRNA: 3'- gGUAG-UCU---UCUCuAUGGUGGGGA--ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 158818 | 0.73 | 0.956536 |
Target: 5'- aCCGUCA-AGGAGcaGUACCACaCCCgcgGCa -3' miRNA: 3'- -GGUAGUcUUCUC--UAUGGUG-GGGaa-CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 120234 | 0.67 | 0.998498 |
Target: 5'- aCCggCAGGAGccGGcgGCCGCgCCgUGCa -3' miRNA: 3'- -GGuaGUCUUC--UCuaUGGUGgGGaACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 143323 | 0.66 | 0.999436 |
Target: 5'- gCCcgCGGuAGAGAcaGCCGCCaCCgaugGCg -3' miRNA: 3'- -GGuaGUCuUCUCUa-UGGUGG-GGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 172588 | 0.66 | 0.999768 |
Target: 5'- aCCGcCAGguGAacGUACCGCUCCUgcgGCg -3' miRNA: 3'- -GGUaGUCuuCUc-UAUGGUGGGGAa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 216847 | 0.71 | 0.977983 |
Target: 5'- uCCAUCAGAuGGuGAcgcacACCACCUCUgcggGCg -3' miRNA: 3'- -GGUAGUCU-UCuCUa----UGGUGGGGAa---CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 172540 | 0.67 | 0.998968 |
Target: 5'- aCCGUCAGGcgGGGGAUcucguGCCGCuguCCCggggucgGCg -3' miRNA: 3'- -GGUAGUCU--UCUCUA-----UGGUG---GGGaa-----CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 217582 | 0.67 | 0.998752 |
Target: 5'- aUCAUCAGGAccccGGGU-CCGCCCCggaccaGCa -3' miRNA: 3'- -GGUAGUCUUc---UCUAuGGUGGGGaa----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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