Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14635 | 5' | -49.8 | NC_003521.1 | + | 783 | 0.74 | 0.929363 |
Target: 5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3' miRNA: 3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 39618 | 0.69 | 0.994997 |
Target: 5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3' miRNA: 3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 50460 | 0.74 | 0.934492 |
Target: 5'- aCGUCGGAggagacGGAGAUGCUGCCCg--GCg -3' miRNA: 3'- gGUAGUCU------UCUCUAUGGUGGGgaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 61488 | 0.66 | 0.999544 |
Target: 5'- aCA-CGGAAGAGAUcaGCCGCUaCUcGCg -3' miRNA: 3'- gGUaGUCUUCUCUA--UGGUGGgGAaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 71126 | 0.67 | 0.998752 |
Target: 5'- aCGUCGGggGAcucgucGCCGCCuCCUccucUGCu -3' miRNA: 3'- gGUAGUCuuCUcua---UGGUGG-GGA----ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 71270 | 0.68 | 0.997007 |
Target: 5'- aCAUCGGcGGAGGcggggGCCgcggcacggGCCCCUgggGCa -3' miRNA: 3'- gGUAGUCuUCUCUa----UGG---------UGGGGAa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 72507 | 0.71 | 0.984249 |
Target: 5'- aCAUCuucGAGGAGGUGgCGCgCCUcaUGCg -3' miRNA: 3'- gGUAGu--CUUCUCUAUgGUGgGGA--ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 75808 | 0.68 | 0.997007 |
Target: 5'- aCCAUgCuGAGGA---ACCugUCCUUGCg -3' miRNA: 3'- -GGUA-GuCUUCUcuaUGGugGGGAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 88394 | 0.69 | 0.992638 |
Target: 5'- aCGUCGGGcacguAGAG--GCCGCgCUCUUGCa -3' miRNA: 3'- gGUAGUCU-----UCUCuaUGGUG-GGGAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 88438 | 0.67 | 0.998498 |
Target: 5'- aCCGcCAGAugacuagaguAGAGGgcgcGCCGCCCCggccgGCc -3' miRNA: 3'- -GGUaGUCU----------UCUCUa---UGGUGGGGaa---CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 90559 | 0.69 | 0.993598 |
Target: 5'- aCC-UgGGAGGAGuggGUACCGCCCCcuagGUa -3' miRNA: 3'- -GGuAgUCUUCUC---UAUGGUGGGGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 98994 | 0.79 | 0.74129 |
Target: 5'- gCGUCAGggGAGGUACCGCggucgUCUUGUa -3' miRNA: 3'- gGUAGUCuuCUCUAUGGUGg----GGAACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 109836 | 0.66 | 0.999768 |
Target: 5'- gCGUCAGGcuGGGUACCgugcucacuGCCCCcaccGCg -3' miRNA: 3'- gGUAGUCUucUCUAUGG---------UGGGGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 117278 | 0.66 | 0.999436 |
Target: 5'- gUCGUCGGccGuGGUGCCGgcuCCCCUcacgcUGCc -3' miRNA: 3'- -GGUAGUCuuCuCUAUGGU---GGGGA-----ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 120234 | 0.67 | 0.998498 |
Target: 5'- aCCggCAGGAGccGGcgGCCGCgCCgUGCa -3' miRNA: 3'- -GGuaGUCUUC--UCuaUGGUGgGGaACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 123401 | 0.7 | 0.986003 |
Target: 5'- gCCGcgCGGAcccGAGAUGCCGCCCUccacccggUGCc -3' miRNA: 3'- -GGUa-GUCUu--CUCUAUGGUGGGGa-------ACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 127221 | 0.67 | 0.999306 |
Target: 5'- gCAUgAGcAGAGc-GCCGCCCCcgUUGCc -3' miRNA: 3'- gGUAgUCuUCUCuaUGGUGGGG--AACG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 139661 | 0.7 | 0.991567 |
Target: 5'- gCCGUCuGAGGAGAgggacgcagACCGCgCCgcGCu -3' miRNA: 3'- -GGUAGuCUUCUCUa--------UGGUGgGGaaCG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 143323 | 0.66 | 0.999436 |
Target: 5'- gCCcgCGGuAGAGAcaGCCGCCaCCgaugGCg -3' miRNA: 3'- -GGuaGUCuUCUCUa-UGGUGG-GGaa--CG- -5' |
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14635 | 5' | -49.8 | NC_003521.1 | + | 149233 | 0.69 | 0.99589 |
Target: 5'- cCCAUCGGcaccucGuGAcccacacACCGCCCCUUGUg -3' miRNA: 3'- -GGUAGUCuu----CuCUa------UGGUGGGGAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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