miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14635 5' -49.8 NC_003521.1 + 239845 0.69 0.994997
Target:  5'- cCCAgCGGGAGcAGAccgccggccucucgUugCGCCCaCUUGCg -3'
miRNA:   3'- -GGUaGUCUUC-UCU--------------AugGUGGG-GAACG- -5'
14635 5' -49.8 NC_003521.1 + 235642 0.71 0.984249
Target:  5'- -aGUUGGGAGGGGUgcacccucGCCGCCCCUUuCg -3'
miRNA:   3'- ggUAGUCUUCUCUA--------UGGUGGGGAAcG- -5'
14635 5' -49.8 NC_003521.1 + 233911 1.16 0.007314
Target:  5'- cCCAUCAGAAGAGAUACCACCCCUUGCg -3'
miRNA:   3'- -GGUAGUCUUCUCUAUGGUGGGGAACG- -5'
14635 5' -49.8 NC_003521.1 + 227780 0.66 0.999707
Target:  5'- cUCGUCGGAGGAG---UCGCCCCc--- -3'
miRNA:   3'- -GGUAGUCUUCUCuauGGUGGGGaacg -5'
14635 5' -49.8 NC_003521.1 + 217582 0.67 0.998752
Target:  5'- aUCAUCAGGAccccGGGU-CCGCCCCggaccaGCa -3'
miRNA:   3'- -GGUAGUCUUc---UCUAuGGUGGGGaa----CG- -5'
14635 5' -49.8 NC_003521.1 + 217019 0.66 0.999687
Target:  5'- -gGUCAGGguuuuccccgggauGGAGAUGCuCACCUCUUcaGUa -3'
miRNA:   3'- ggUAGUCU--------------UCUCUAUG-GUGGGGAA--CG- -5'
14635 5' -49.8 NC_003521.1 + 216847 0.71 0.977983
Target:  5'- uCCAUCAGAuGGuGAcgcacACCACCUCUgcggGCg -3'
miRNA:   3'- -GGUAGUCU-UCuCUa----UGGUGGGGAa---CG- -5'
14635 5' -49.8 NC_003521.1 + 213520 0.67 0.999306
Target:  5'- aCGUCaAGGccuGGAGcUACUACCUCUgcUGCg -3'
miRNA:   3'- gGUAG-UCU---UCUCuAUGGUGGGGA--ACG- -5'
14635 5' -49.8 NC_003521.1 + 203268 0.67 0.998752
Target:  5'- aCAUCuacGAGGAGAUuccGCCgcgACCCCcgcUGCc -3'
miRNA:   3'- gGUAGu--CUUCUCUA---UGG---UGGGGa--ACG- -5'
14635 5' -49.8 NC_003521.1 + 201010 0.74 0.929363
Target:  5'- gCCAUCGGcGGAGG-ACCGCCCg--GCg -3'
miRNA:   3'- -GGUAGUCuUCUCUaUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 193891 0.66 0.999436
Target:  5'- gCCA--GGAGGGGAUACCGuuCCUa-- -3'
miRNA:   3'- -GGUagUCUUCUCUAUGGUggGGAacg -5'
14635 5' -49.8 NC_003521.1 + 188628 0.67 0.998498
Target:  5'- aCUGUCuGAuGAGcucGCCGCCCCggcgGCa -3'
miRNA:   3'- -GGUAGuCUuCUCua-UGGUGGGGaa--CG- -5'
14635 5' -49.8 NC_003521.1 + 187071 0.67 0.998498
Target:  5'- uCCGUCAGcuucuccucgaGGGGGAcgacUACCuCCCCUccGCg -3'
miRNA:   3'- -GGUAGUC-----------UUCUCU----AUGGuGGGGAa-CG- -5'
14635 5' -49.8 NC_003521.1 + 178866 0.66 0.999436
Target:  5'- gUCAgcgggCAGuAGAGcgagGCCGCCUgUUGCg -3'
miRNA:   3'- -GGUa----GUCuUCUCua--UGGUGGGgAACG- -5'
14635 5' -49.8 NC_003521.1 + 172588 0.66 0.999768
Target:  5'- aCCGcCAGguGAacGUACCGCUCCUgcgGCg -3'
miRNA:   3'- -GGUaGUCuuCUc-UAUGGUGGGGAa--CG- -5'
14635 5' -49.8 NC_003521.1 + 172540 0.67 0.998968
Target:  5'- aCCGUCAGGcgGGGGAUcucguGCCGCuguCCCggggucgGCg -3'
miRNA:   3'- -GGUAGUCU--UCUCUA-----UGGUG---GGGaa-----CG- -5'
14635 5' -49.8 NC_003521.1 + 171956 0.67 0.998752
Target:  5'- aCCAcUAGAGGAGGgaacgugcuCCAUCCCUUa- -3'
miRNA:   3'- -GGUaGUCUUCUCUau-------GGUGGGGAAcg -5'
14635 5' -49.8 NC_003521.1 + 169050 0.69 0.995216
Target:  5'- gUCGUCcGggGGGAUGCgCAagagaCCCUucUGCg -3'
miRNA:   3'- -GGUAGuCuuCUCUAUG-GUg----GGGA--ACG- -5'
14635 5' -49.8 NC_003521.1 + 166228 0.67 0.998968
Target:  5'- gCUggUAGAAGAgcguGAUGCCGCCCg--GCg -3'
miRNA:   3'- -GGuaGUCUUCU----CUAUGGUGGGgaaCG- -5'
14635 5' -49.8 NC_003521.1 + 158818 0.73 0.956536
Target:  5'- aCCGUCA-AGGAGcaGUACCACaCCCgcgGCa -3'
miRNA:   3'- -GGUAGUcUUCUC--UAUGGUG-GGGaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.