Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14636 | 3' | -57 | NC_003521.1 | + | 48684 | 0.66 | 0.937803 |
Target: 5'- -aCGuGGAUCCGcGGAcgcCGACGGAgCCGAc -3' miRNA: 3'- caGC-UCUAGGU-CCU---GCUGCCUgGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 94189 | 0.66 | 0.937338 |
Target: 5'- cGUCGuGG-CCGGGgcccuugaagacgACGACGGGCUCGu -3' miRNA: 3'- -CAGCuCUaGGUCC-------------UGCUGCCUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 111828 | 0.66 | 0.933046 |
Target: 5'- -gCGAGAUCUGGaGCGugGuGCCCAGc -3' miRNA: 3'- caGCUCUAGGUCcUGCugCcUGGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 187516 | 0.66 | 0.932558 |
Target: 5'- -aCGAGAcggcuccUCCGGGACGACcgauaaugaGcGGCCCGu -3' miRNA: 3'- caGCUCU-------AGGUCCUGCUG---------C-CUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 52307 | 0.66 | 0.931575 |
Target: 5'- cGUgGGGcccgCCGGccuccucguaucucGGCGGCGGACCCAGg -3' miRNA: 3'- -CAgCUCua--GGUC--------------CUGCUGCCUGGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 52220 | 0.66 | 0.928066 |
Target: 5'- -aCGGGggCCgguAGGGCGGCGGGCUa-- -3' miRNA: 3'- caGCUCuaGG---UCCUGCUGCCUGGguu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 103050 | 0.66 | 0.922862 |
Target: 5'- --aGAGuUCCAGGGCGugACGGAagagcuCCCAGa -3' miRNA: 3'- cagCUCuAGGUCCUGC--UGCCU------GGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 33665 | 0.67 | 0.917436 |
Target: 5'- -gCGGGAUCCAGcGAcCGGcCGuGGCCCGc -3' miRNA: 3'- caGCUCUAGGUC-CU-GCU-GC-CUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 103225 | 0.67 | 0.911786 |
Target: 5'- gGUCGccggCCAGG-CGGCGG-CCCAAg -3' miRNA: 3'- -CAGCucuaGGUCCuGCUGCCuGGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 41627 | 0.67 | 0.899826 |
Target: 5'- -cCGuGGUCUGGGGCGugGcGCCCGu -3' miRNA: 3'- caGCuCUAGGUCCUGCugCcUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 230420 | 0.67 | 0.886999 |
Target: 5'- uUUGAGAUgCGGGGCGacGCGGuAUCCAu -3' miRNA: 3'- cAGCUCUAgGUCCUGC--UGCC-UGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 16784 | 0.67 | 0.886999 |
Target: 5'- --aGAG-UCCcaGGGGCGACGGcGCCCGc -3' miRNA: 3'- cagCUCuAGG--UCCUGCUGCC-UGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 148511 | 0.67 | 0.885002 |
Target: 5'- -aUGGGAUCCGGGACGGgGGugggggaggguuuuACCUGAc -3' miRNA: 3'- caGCUCUAGGUCCUGCUgCC--------------UGGGUU- -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 173333 | 0.68 | 0.880268 |
Target: 5'- -aCGAGGU-CGGGAgUGACGGACCUc- -3' miRNA: 3'- caGCUCUAgGUCCU-GCUGCCUGGGuu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 229064 | 0.68 | 0.880268 |
Target: 5'- -aUGAGccguccCCAGGGCGAguCGGGCCCGu -3' miRNA: 3'- caGCUCua----GGUCCUGCU--GCCUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 176465 | 0.68 | 0.873332 |
Target: 5'- cUCGGGcauGUCCAGGGCGcccaGGGCCUg- -3' miRNA: 3'- cAGCUC---UAGGUCCUGCug--CCUGGGuu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 35973 | 0.68 | 0.873332 |
Target: 5'- -cCGAGAUCCGGGugGACuacACCUc- -3' miRNA: 3'- caGCUCUAGGUCCugCUGcc-UGGGuu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 190534 | 0.68 | 0.873332 |
Target: 5'- -gCGAGGUgCGGcGgcagcaGCGGCGGACCCGg -3' miRNA: 3'- caGCUCUAgGUC-C------UGCUGCCUGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 73890 | 0.68 | 0.858858 |
Target: 5'- -cCGAGAUCCgcaAGGcCGugGGcCCCGu -3' miRNA: 3'- caGCUCUAGG---UCCuGCugCCuGGGUu -5' |
|||||||
14636 | 3' | -57 | NC_003521.1 | + | 79064 | 0.68 | 0.858858 |
Target: 5'- --gGGGGUCCGGGGCu-CGGGCaCCAGc -3' miRNA: 3'- cagCUCUAGGUCCUGcuGCCUG-GGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home