Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 235087 | 1.12 | 0.004398 |
Target: 5'- gGACGGUCUUCUCGCGCGGACACUACCa -3' miRNA: 3'- -CUGCCAGAAGAGCGCGCCUGUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 72189 | 0.8 | 0.382913 |
Target: 5'- --gGGUCUUCUCGCGCaGGAU-CUGCCc -3' miRNA: 3'- cugCCAGAAGAGCGCG-CCUGuGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 81760 | 0.77 | 0.534106 |
Target: 5'- uGugGGUCUUCUUGUG-GGAauucCACUGCCc -3' miRNA: 3'- -CugCCAGAAGAGCGCgCCU----GUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 232905 | 0.74 | 0.71106 |
Target: 5'- cGCGGUCUg--UGCGUGGAC-CUGCUg -3' miRNA: 3'- cUGCCAGAagaGCGCGCCUGuGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 218023 | 0.73 | 0.749193 |
Target: 5'- uGCGGUCacUUCaCGCGCGGAUAgCUACg -3' miRNA: 3'- cUGCCAG--AAGaGCGCGCCUGU-GAUGg -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 50434 | 0.73 | 0.785777 |
Target: 5'- cGCGGU--UCUCGuCGUGGGCugUAUCg -3' miRNA: 3'- cUGCCAgaAGAGC-GCGCCUGugAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 84701 | 0.73 | 0.757578 |
Target: 5'- cGACGGggUUUCUgaCGggcgagaaggagaCGCGGGCACUGCCg -3' miRNA: 3'- -CUGCCa-GAAGA--GC-------------GCGCCUGUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 983 | 0.71 | 0.844503 |
Target: 5'- cGGCGGUCUgCUCcCGUGGGC-CgGCCg -3' miRNA: 3'- -CUGCCAGAaGAGcGCGCCUGuGaUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 180066 | 0.71 | 0.852222 |
Target: 5'- cGGCGGggaUUCUCcCGCGGcgACUGCCg -3' miRNA: 3'- -CUGCCag-AAGAGcGCGCCugUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 41855 | 0.7 | 0.894405 |
Target: 5'- uGACGGUCagcacgcUCUCGCGCcuGGugcccaaccucCACUGCCu -3' miRNA: 3'- -CUGCCAGa------AGAGCGCG--CCu----------GUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 212502 | 0.7 | 0.894405 |
Target: 5'- cGGCGGUCcgcaggC-CGCGCcgGGGuCGCUGCCg -3' miRNA: 3'- -CUGCCAGaa----GaGCGCG--CCU-GUGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 26147 | 0.7 | 0.894405 |
Target: 5'- -gUGGUCUUC-CGCGUcuacGGACuGCUGCUg -3' miRNA: 3'- cuGCCAGAAGaGCGCG----CCUG-UGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 133968 | 0.7 | 0.881165 |
Target: 5'- uACGGgcgUCcaUGCGCGGACGCUgGCCg -3' miRNA: 3'- cUGCCagaAGa-GCGCGCCUGUGA-UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 79344 | 0.7 | 0.906784 |
Target: 5'- --aGGg--UCUCGCGCaaaGGACACgGCCa -3' miRNA: 3'- cugCCagaAGAGCGCG---CCUGUGaUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 131805 | 0.69 | 0.912642 |
Target: 5'- -gUGGUaccCUCGcCGCGGACccACUACCu -3' miRNA: 3'- cuGCCAgaaGAGC-GCGCCUG--UGAUGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 187599 | 0.69 | 0.933838 |
Target: 5'- cGGCGGUCgcUUCGCccGCGGACucccggcgaGCUcACCg -3' miRNA: 3'- -CUGCCAGaaGAGCG--CGCCUG---------UGA-UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 149746 | 0.69 | 0.932373 |
Target: 5'- uGGCaGGUCUUCUgcggcgagggcggcCGCGCGGuACGCcucaacGCCa -3' miRNA: 3'- -CUG-CCAGAAGA--------------GCGCGCC-UGUGa-----UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 57415 | 0.69 | 0.918278 |
Target: 5'- uGCGGUCgcccaccgUCUCGCGgaCGGGCucCUGCa -3' miRNA: 3'- cUGCCAGa-------AGAGCGC--GCCUGu-GAUGg -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 154210 | 0.69 | 0.912642 |
Target: 5'- cGACaaGGUCaagucccUCUCGCGCGaGCGCUucGCCg -3' miRNA: 3'- -CUG--CCAGa------AGAGCGCGCcUGUGA--UGG- -5' |
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14637 | 3' | -54.6 | NC_003521.1 | + | 155935 | 0.69 | 0.912642 |
Target: 5'- uGACGGcCUaCUCGCGCcacccggaccGGGCGgccuuCUACCg -3' miRNA: 3'- -CUGCCaGAaGAGCGCG----------CCUGU-----GAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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