miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 218023 0.73 0.749193
Target:  5'- uGCGGUCacUUCaCGCGCGGAUAgCUACg -3'
miRNA:   3'- cUGCCAG--AAGaGCGCGCCUGU-GAUGg -5'
14637 3' -54.6 NC_003521.1 + 107342 0.67 0.971201
Target:  5'- aGCGGcgccaggugauccUCgacCUCGgGCGGACAC-ACCu -3'
miRNA:   3'- cUGCC-------------AGaa-GAGCgCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 6103 0.67 0.974121
Target:  5'- aACGGUCgug-CGaguCGCGGACACgcaguUGCCa -3'
miRNA:   3'- cUGCCAGaagaGC---GCGCCUGUG-----AUGG- -5'
14637 3' -54.6 NC_003521.1 + 139449 0.66 0.986386
Target:  5'- aGCGGcgCgacggCUCGCGCacccgGGACuuucGCUGCCu -3'
miRNA:   3'- cUGCCa-Gaa---GAGCGCG-----CCUG----UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 26147 0.7 0.894405
Target:  5'- -gUGGUCUUC-CGCGUcuacGGACuGCUGCUg -3'
miRNA:   3'- cuGCCAGAAGaGCGCG----CCUG-UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 212502 0.7 0.894405
Target:  5'- cGGCGGUCcgcaggC-CGCGCcgGGGuCGCUGCCg -3'
miRNA:   3'- -CUGCCAGaa----GaGCGCG--CCU-GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 131805 0.69 0.912642
Target:  5'- -gUGGUaccCUCGcCGCGGACccACUACCu -3'
miRNA:   3'- cuGCCAgaaGAGC-GCGCCUG--UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 47976 0.69 0.918278
Target:  5'- cGCGGcgucgCUUCUCGUccaCGGACGCgccGCCg -3'
miRNA:   3'- cUGCCa----GAAGAGCGc--GCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 91765 0.68 0.943089
Target:  5'- cGCGGcCgcgUCgaagcccaGCGCGGGCACgGCCu -3'
miRNA:   3'- cUGCCaGa--AGag------CGCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 177198 0.67 0.965614
Target:  5'- uGCGGUaCUUCUCcagGCGG-CGCUGCa -3'
miRNA:   3'- cUGCCA-GAAGAGcg-CGCCuGUGAUGg -5'
14637 3' -54.6 NC_003521.1 + 18429 0.68 0.955309
Target:  5'- uGCGGcCUgCUcaagaCGCGCGGcCugUGCCg -3'
miRNA:   3'- cUGCCaGAaGA-----GCGCGCCuGugAUGG- -5'
14637 3' -54.6 NC_003521.1 + 88262 0.69 0.933838
Target:  5'- cACGGUgga---GCGCGuGACGCUGCCg -3'
miRNA:   3'- cUGCCAgaagagCGCGC-CUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 84701 0.73 0.757578
Target:  5'- cGACGGggUUUCUgaCGggcgagaaggagaCGCGGGCACUGCCg -3'
miRNA:   3'- -CUGCCa-GAAGA--GC-------------GCGCCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 55851 0.68 0.955309
Target:  5'- cACGGUg-UCcgaauugcaaaUCGCGCccaagaugGGACGCUACCa -3'
miRNA:   3'- cUGCCAgaAG-----------AGCGCG--------CCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 50434 0.73 0.785777
Target:  5'- cGCGGU--UCUCGuCGUGGGCugUAUCg -3'
miRNA:   3'- cUGCCAgaAGAGC-GCGCCUGugAUGG- -5'
14637 3' -54.6 NC_003521.1 + 137025 0.69 0.928876
Target:  5'- cACGGUCaUCUCGC-CGGAgCACgGCg -3'
miRNA:   3'- cUGCCAGaAGAGCGcGCCU-GUGaUGg -5'
14637 3' -54.6 NC_003521.1 + 197651 0.67 0.962385
Target:  5'- cGCGGUggcgCUCGUGCGGcagcaGCGCcACCa -3'
miRNA:   3'- cUGCCAgaa-GAGCGCGCC-----UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 172128 0.67 0.971476
Target:  5'- cACGGUCaugagUUCGuCGCGGcACAUgGCCg -3'
miRNA:   3'- cUGCCAGaa---GAGC-GCGCC-UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 983 0.71 0.844503
Target:  5'- cGGCGGUCUgCUCcCGUGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCGCCUGuGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 155935 0.69 0.912642
Target:  5'- uGACGGcCUaCUCGCGCcacccggaccGGGCGgccuuCUACCg -3'
miRNA:   3'- -CUGCCaGAaGAGCGCG----------CCUGU-----GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.