miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 56806 0.72 0.566793
Target:  5'- -cGACGGCaCCUCGGGGUGG-GAaCGUc -3'
miRNA:   3'- auCUGUCG-GGGGCCCUACCaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 74920 0.67 0.86693
Target:  5'- gAGuCGGCCCggcagcgCGGGGUGGUGuaccCGCc -3'
miRNA:   3'- aUCuGUCGGGg------GCCCUACCACua--GCG- -5'
14637 5' -58.4 NC_003521.1 + 90633 0.66 0.88085
Target:  5'- cAGAaGGCCCgCCGGGAgcGGUag-CGCa -3'
miRNA:   3'- aUCUgUCGGG-GGCCCUa-CCAcuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 217017 0.66 0.906224
Target:  5'- cUGGuCAGgguuuUCCCCGGGAUGGaGAU-GCu -3'
miRNA:   3'- -AUCuGUC-----GGGGGCCCUACCaCUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 37518 0.7 0.72244
Target:  5'- cGGACAucagcgacGUCCUgGGGGUGGgcagcgggGGUCGCg -3'
miRNA:   3'- aUCUGU--------CGGGGgCCCUACCa-------CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 224317 0.69 0.731891
Target:  5'- cAGAC-GCCCCCGucAcGGUGAcUCGCg -3'
miRNA:   3'- aUCUGuCGGGGGCccUaCCACU-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 40970 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 44285 0.69 0.768816
Target:  5'- -cGGCuuucuCCCCCGGGAgcUGGgcgGGUUGCu -3'
miRNA:   3'- auCUGuc---GGGGGCCCU--ACCa--CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 38230 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 44836 0.67 0.86693
Target:  5'- --cACAGCUCCUGGGGcUGGUGAc--- -3'
miRNA:   3'- aucUGUCGGGGGCCCU-ACCACUagcg -5'
14637 5' -58.4 NC_003521.1 + 178805 0.67 0.828833
Target:  5'- gAGGCAuGCCCggCGGGcgGGUcGAUCGa -3'
miRNA:   3'- aUCUGU-CGGGg-GCCCuaCCA-CUAGCg -5'
14637 5' -58.4 NC_003521.1 + 103971 0.68 0.820694
Target:  5'- gGGACAGCgcaggCCCaGGGUGGUGAagacggCGUa -3'
miRNA:   3'- aUCUGUCGg----GGGcCCUACCACUa-----GCG- -5'
14637 5' -58.4 NC_003521.1 + 37220 0.72 0.576478
Target:  5'- uUAGGCGGCCUCgGGGGUGGaGAcCGg -3'
miRNA:   3'- -AUCUGUCGGGGgCCCUACCaCUaGCg -5'
14637 5' -58.4 NC_003521.1 + 236279 0.67 0.852235
Target:  5'- gUAGugAcUCCCCGGGGacccUGcgcGUGAUCGCc -3'
miRNA:   3'- -AUCugUcGGGGGCCCU----AC---CACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 120885 0.7 0.674281
Target:  5'- cGGACuGCCCCUGGaGcgGGUGcccGUCaGCg -3'
miRNA:   3'- aUCUGuCGGGGGCC-CuaCCAC---UAG-CG- -5'
14637 5' -58.4 NC_003521.1 + 217364 0.68 0.820694
Target:  5'- gUAG-UAGUCCCCGuaccaGAUGGcGGUCGCg -3'
miRNA:   3'- -AUCuGUCGGGGGCc----CUACCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 207218 0.67 0.859677
Target:  5'- -cGACAGCaacuauUUCGGGGUGGUGcgCGa -3'
miRNA:   3'- auCUGUCGg-----GGGCCCUACCACuaGCg -5'
14637 5' -58.4 NC_003521.1 + 211330 0.67 0.86693
Target:  5'- cAGGCGGUCCCgCGGGcgcgaGUGGUuGGgguccCGCa -3'
miRNA:   3'- aUCUGUCGGGG-GCCC-----UACCA-CUa----GCG- -5'
14637 5' -58.4 NC_003521.1 + 77698 0.7 0.712919
Target:  5'- cAGACAGaUgCCCGaGGAggcggcGGUGGUCGUg -3'
miRNA:   3'- aUCUGUC-GgGGGC-CCUa-----CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 188740 0.69 0.768816
Target:  5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3'
miRNA:   3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.