miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 235245 1.1 0.008553
Target:  5'- cGUGUUCGACAGCGAUUUCCACCGCCGa -3'
miRNA:   3'- -CACAAGCUGUCGCUAAAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 59421 0.82 0.370513
Target:  5'- cGUGgcacgCGACAGCGGcg-CCGCCGCCGg -3'
miRNA:   3'- -CACaa---GCUGUCGCUaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 101014 0.82 0.412021
Target:  5'- aGUGgcUCGACGGCGGcuucgCCACCGCCGa -3'
miRNA:   3'- -CACa-AGCUGUCGCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 200427 0.8 0.493469
Target:  5'- -aGUUCGACAGCGAggugcgCCACgaCGCCGa -3'
miRNA:   3'- caCAAGCUGUCGCUaaa---GGUG--GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 85145 0.76 0.713173
Target:  5'- ---cUCGGCGGCGAUgacaucguccagaccUCCGCCGCCa -3'
miRNA:   3'- cacaAGCUGUCGCUAa--------------AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 203027 0.73 0.847598
Target:  5'- -gGUUCGGCGGUGAUagCCGgUGCCa -3'
miRNA:   3'- caCAAGCUGUCGCUAaaGGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 16590 0.73 0.847598
Target:  5'- aUGUUCGACAGCGGUguggACCGCg- -3'
miRNA:   3'- cACAAGCUGUCGCUAaaggUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 122728 0.73 0.847598
Target:  5'- cGUGgUCGugGGCGAcgg-CGCCGCCGa -3'
miRNA:   3'- -CACaAGCugUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 116822 0.73 0.855385
Target:  5'- cUGggUGcuGCAGCGGUUUCCagaccugacgGCCGCCGa -3'
miRNA:   3'- cACaaGC--UGUCGCUAAAGG----------UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 228581 0.72 0.862974
Target:  5'- ---cUCGGCAGCGAgagugaggUCUGCCGUCGa -3'
miRNA:   3'- cacaAGCUGUCGCUaa------AGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 129303 0.72 0.877537
Target:  5'- cGUGgaacUUGAUGGCGugcgCCGCCGCCGc -3'
miRNA:   3'- -CACa---AGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 196363 0.72 0.877537
Target:  5'- -gGUUCu-CGGCGAacacUUCCACCGCCu -3'
miRNA:   3'- caCAAGcuGUCGCUa---AAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 130130 0.72 0.877537
Target:  5'- -cGUcgUCGGCGGCGccg-CCGCUGCCGc -3'
miRNA:   3'- caCA--AGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 122809 0.71 0.904065
Target:  5'- -aGUcccgCGGCAGCGAcacgCCGCCGCUa -3'
miRNA:   3'- caCAa---GCUGUCGCUaaa-GGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 89315 0.71 0.910134
Target:  5'- cUGgcCGACGGCGGUagUUCACCGuCCGc -3'
miRNA:   3'- cACaaGCUGUCGCUAa-AGGUGGC-GGC- -5'
14638 3' -52.8 NC_003521.1 + 132633 0.71 0.92695
Target:  5'- ---cUCGGCGGCGGcg-CCACCGgCGg -3'
miRNA:   3'- cacaAGCUGUCGCUaaaGGUGGCgGC- -5'
14638 3' -52.8 NC_003521.1 + 186369 0.71 0.915972
Target:  5'- ----aCGGCAGCGAgcuggaaUUCACCGCCa -3'
miRNA:   3'- cacaaGCUGUCGCUaa-----AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 44404 0.71 0.910134
Target:  5'- -cGggCGACAGCGAcugUCUguGCCGCUGc -3'
miRNA:   3'- caCaaGCUGUCGCUaa-AGG--UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 105549 0.71 0.914244
Target:  5'- cGUGUccucguccuccucgUCGuCGGCG---UCCGCCGCCGu -3'
miRNA:   3'- -CACA--------------AGCuGUCGCuaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 166442 0.71 0.92695
Target:  5'- cGUGUagaUCGAgGGCGAg--CCGUCGCCGc -3'
miRNA:   3'- -CACA---AGCUgUCGCUaaaGGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.