miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 3' -52.8 NC_003521.1 + 101014 0.82 0.412021
Target:  5'- aGUGgcUCGACGGCGGcuucgCCACCGCCGa -3'
miRNA:   3'- -CACa-AGCUGUCGCUaaa--GGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 77593 0.69 0.961626
Target:  5'- aUGUUCGuCcGCGAg-UCCcagGCCGCCGg -3'
miRNA:   3'- cACAAGCuGuCGCUaaAGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 163301 0.69 0.96496
Target:  5'- -aGUUgCGACGGCGug-UCCACgGUCa -3'
miRNA:   3'- caCAA-GCUGUCGCuaaAGGUGgCGGc -5'
14638 3' -52.8 NC_003521.1 + 182973 0.66 0.995243
Target:  5'- cGUGUcuagcagCGACGGCGuucggcgUCACCgGCCGa -3'
miRNA:   3'- -CACAa------GCUGUCGCuaaa---GGUGG-CGGC- -5'
14638 3' -52.8 NC_003521.1 + 203027 0.73 0.847598
Target:  5'- -gGUUCGGCGGUGAUagCCGgUGCCa -3'
miRNA:   3'- caCAAGCUGUCGCUAaaGGUgGCGGc -5'
14638 3' -52.8 NC_003521.1 + 122728 0.73 0.847598
Target:  5'- cGUGgUCGugGGCGAcgg-CGCCGCCGa -3'
miRNA:   3'- -CACaAGCugUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 196363 0.72 0.877537
Target:  5'- -gGUUCu-CGGCGAacacUUCCACCGCCu -3'
miRNA:   3'- caCAAGcuGUCGCUa---AAGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 44404 0.71 0.910134
Target:  5'- -cGggCGACAGCGAcugUCUguGCCGCUGc -3'
miRNA:   3'- caCaaGCUGUCGCUaa-AGG--UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 110688 0.7 0.941667
Target:  5'- -gGUggCGGCAGCGGcgg-CGCCGCCGa -3'
miRNA:   3'- caCAa-GCUGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 21033 0.69 0.958078
Target:  5'- ----aCGccACGGCGAgaUCCACCGCUGu -3'
miRNA:   3'- cacaaGC--UGUCGCUaaAGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 39460 0.7 0.94611
Target:  5'- -gGgaCGGCAGCGGUUcgugUCCcgucGCCGCCu -3'
miRNA:   3'- caCaaGCUGUCGCUAA----AGG----UGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 113280 0.71 0.921577
Target:  5'- cUGgcCGACGGCGug--CUGCCGCCGc -3'
miRNA:   3'- cACaaGCUGUCGCuaaaGGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 200427 0.8 0.493469
Target:  5'- -aGUUCGACAGCGAggugcgCCACgaCGCCGa -3'
miRNA:   3'- caCAAGCUGUCGCUaaa---GGUG--GCGGC- -5'
14638 3' -52.8 NC_003521.1 + 124967 0.69 0.954312
Target:  5'- cGUGUUUGACgaGGCGugcgCCGCCcGCCu -3'
miRNA:   3'- -CACAAGCUG--UCGCuaaaGGUGG-CGGc -5'
14638 3' -52.8 NC_003521.1 + 85145 0.76 0.713173
Target:  5'- ---cUCGGCGGCGAUgacaucguccagaccUCCGCCGCCa -3'
miRNA:   3'- cacaAGCUGUCGCUAa--------------AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 186369 0.71 0.915972
Target:  5'- ----aCGGCAGCGAgcuggaaUUCACCGCCa -3'
miRNA:   3'- cacaaGCUGUCGCUaa-----AGGUGGCGGc -5'
14638 3' -52.8 NC_003521.1 + 16793 0.69 0.958078
Target:  5'- -gGggCGACGGCGcccgCCccgACCGCCGg -3'
miRNA:   3'- caCaaGCUGUCGCuaaaGG---UGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 118704 0.69 0.961626
Target:  5'- cGUGUUCagccGCGGCGAga--CGCCGCUGc -3'
miRNA:   3'- -CACAAGc---UGUCGCUaaagGUGGCGGC- -5'
14638 3' -52.8 NC_003521.1 + 16590 0.73 0.847598
Target:  5'- aUGUUCGACAGCGGUguggACCGCg- -3'
miRNA:   3'- cACAAGCUGUCGCUAaaggUGGCGgc -5'
14638 3' -52.8 NC_003521.1 + 228581 0.72 0.862974
Target:  5'- ---cUCGGCAGCGAgagugaggUCUGCCGUCGa -3'
miRNA:   3'- cacaAGCUGUCGCUaa------AGGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.