Results 1 - 20 of 285 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14638 | 5' | -60.3 | NC_003521.1 | + | 92041 | 0.66 | 0.857857 |
Target: 5'- aGCCGcGGcuccuCGGCGCGaCCGCCGAg -3' miRNA: 3'- -UGGC-CCuccuuGCUGCGC-GGCGGUUg -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 230318 | 0.66 | 0.857857 |
Target: 5'- cGCCGccuGGGGGGCcACGCcauccCCGCCGGCg -3' miRNA: 3'- -UGGCc--CUCCUUGcUGCGc----GGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 80575 | 0.66 | 0.857857 |
Target: 5'- cCCGGGAGaAGCG-CGCG-CGCCuuucACg -3' miRNA: 3'- uGGCCCUCcUUGCuGCGCgGCGGu---UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 110355 | 0.66 | 0.857857 |
Target: 5'- cGCCGaagaGcAGGAGCGcugGCGCGUCGUCGAUc -3' miRNA: 3'- -UGGCc---C-UCCUUGC---UGCGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 16200 | 0.66 | 0.857857 |
Target: 5'- uGCUGGcccuucGAGGuGGCGGCGCccuGCCGCCuGGCc -3' miRNA: 3'- -UGGCC------CUCC-UUGCUGCG---CGGCGG-UUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 119633 | 0.66 | 0.857857 |
Target: 5'- gACCGuGGAGauacgccaguACGACGCGCUgGCCGc- -3' miRNA: 3'- -UGGC-CCUCcu--------UGCUGCGCGG-CGGUug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 157280 | 0.66 | 0.857857 |
Target: 5'- uCCGGG-GcAACGGCG-GCCGCguACg -3' miRNA: 3'- uGGCCCuCcUUGCUGCgCGGCGguUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 128449 | 0.66 | 0.857857 |
Target: 5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3' miRNA: 3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 165209 | 0.66 | 0.857857 |
Target: 5'- gUCGGcGAcuGAGcCGugGCGCCGCCcgAACg -3' miRNA: 3'- uGGCC-CUc-CUU-GCugCGCGGCGG--UUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 118627 | 0.66 | 0.857857 |
Target: 5'- aGCauGGAGucGCGAgGgCGUCGCCAGCc -3' miRNA: 3'- -UGgcCCUCcuUGCUgC-GCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 165264 | 0.66 | 0.857857 |
Target: 5'- -aCaGGAGGGcGCuGGCGUagccGCCGCCGGCg -3' miRNA: 3'- ugGcCCUCCU-UG-CUGCG----CGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 171599 | 0.66 | 0.85713 |
Target: 5'- cACCaGcGGAacccGAGCGGCggcgggaGUGCCGCCGACg -3' miRNA: 3'- -UGG-C-CCUc---CUUGCUG-------CGCGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 138037 | 0.66 | 0.85713 |
Target: 5'- uGCCGGcGcacGGGGcugugggucgcccGCGAC-CGCCGCgGACa -3' miRNA: 3'- -UGGCC-C---UCCU-------------UGCUGcGCGGCGgUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 68333 | 0.66 | 0.855671 |
Target: 5'- cCUGGacGAGGAuuccuaucccgccgACGGCGCaccGCUGCCGGCc -3' miRNA: 3'- uGGCC--CUCCU--------------UGCUGCG---CGGCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 58757 | 0.66 | 0.855671 |
Target: 5'- uGCgGGcuGAGGuccagccacugcagGGCGGCGCGC-GCCGGCg -3' miRNA: 3'- -UGgCC--CUCC--------------UUGCUGCGCGgCGGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 207922 | 0.66 | 0.850509 |
Target: 5'- cGCCGGGG---GCGGCGgGCaCGgCGGCa -3' miRNA: 3'- -UGGCCCUccuUGCUGCgCG-GCgGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 148410 | 0.66 | 0.850509 |
Target: 5'- uGCgaGGGAGccauggugcGGGCGGcCGCGCCGgCGGCu -3' miRNA: 3'- -UGg-CCCUC---------CUUGCU-GCGCGGCgGUUG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 17239 | 0.66 | 0.850509 |
Target: 5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3' miRNA: 3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 17785 | 0.66 | 0.850509 |
Target: 5'- gACCuGGAGGccguCGGCGUGCUgGCCGuGCg -3' miRNA: 3'- -UGGcCCUCCuu--GCUGCGCGG-CGGU-UG- -5' |
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14638 | 5' | -60.3 | NC_003521.1 | + | 159777 | 0.66 | 0.850509 |
Target: 5'- uACUGGGGGGuugGACGgaGUCGCgAACg -3' miRNA: 3'- -UGGCCCUCCuugCUGCg-CGGCGgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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