miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 92041 0.66 0.857857
Target:  5'- aGCCGcGGcuccuCGGCGCGaCCGCCGAg -3'
miRNA:   3'- -UGGC-CCuccuuGCUGCGC-GGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 230318 0.66 0.857857
Target:  5'- cGCCGccuGGGGGGCcACGCcauccCCGCCGGCg -3'
miRNA:   3'- -UGGCc--CUCCUUGcUGCGc----GGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 80575 0.66 0.857857
Target:  5'- cCCGGGAGaAGCG-CGCG-CGCCuuucACg -3'
miRNA:   3'- uGGCCCUCcUUGCuGCGCgGCGGu---UG- -5'
14638 5' -60.3 NC_003521.1 + 110355 0.66 0.857857
Target:  5'- cGCCGaagaGcAGGAGCGcugGCGCGUCGUCGAUc -3'
miRNA:   3'- -UGGCc---C-UCCUUGC---UGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 16200 0.66 0.857857
Target:  5'- uGCUGGcccuucGAGGuGGCGGCGCccuGCCGCCuGGCc -3'
miRNA:   3'- -UGGCC------CUCC-UUGCUGCG---CGGCGG-UUG- -5'
14638 5' -60.3 NC_003521.1 + 119633 0.66 0.857857
Target:  5'- gACCGuGGAGauacgccaguACGACGCGCUgGCCGc- -3'
miRNA:   3'- -UGGC-CCUCcu--------UGCUGCGCGG-CGGUug -5'
14638 5' -60.3 NC_003521.1 + 157280 0.66 0.857857
Target:  5'- uCCGGG-GcAACGGCG-GCCGCguACg -3'
miRNA:   3'- uGGCCCuCcUUGCUGCgCGGCGguUG- -5'
14638 5' -60.3 NC_003521.1 + 128449 0.66 0.857857
Target:  5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3'
miRNA:   3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 165209 0.66 0.857857
Target:  5'- gUCGGcGAcuGAGcCGugGCGCCGCCcgAACg -3'
miRNA:   3'- uGGCC-CUc-CUU-GCugCGCGGCGG--UUG- -5'
14638 5' -60.3 NC_003521.1 + 118627 0.66 0.857857
Target:  5'- aGCauGGAGucGCGAgGgCGUCGCCAGCc -3'
miRNA:   3'- -UGgcCCUCcuUGCUgC-GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 165264 0.66 0.857857
Target:  5'- -aCaGGAGGGcGCuGGCGUagccGCCGCCGGCg -3'
miRNA:   3'- ugGcCCUCCU-UG-CUGCG----CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 171599 0.66 0.85713
Target:  5'- cACCaGcGGAacccGAGCGGCggcgggaGUGCCGCCGACg -3'
miRNA:   3'- -UGG-C-CCUc---CUUGCUG-------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 138037 0.66 0.85713
Target:  5'- uGCCGGcGcacGGGGcugugggucgcccGCGAC-CGCCGCgGACa -3'
miRNA:   3'- -UGGCC-C---UCCU-------------UGCUGcGCGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 68333 0.66 0.855671
Target:  5'- cCUGGacGAGGAuuccuaucccgccgACGGCGCaccGCUGCCGGCc -3'
miRNA:   3'- uGGCC--CUCCU--------------UGCUGCG---CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 58757 0.66 0.855671
Target:  5'- uGCgGGcuGAGGuccagccacugcagGGCGGCGCGC-GCCGGCg -3'
miRNA:   3'- -UGgCC--CUCC--------------UUGCUGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 207922 0.66 0.850509
Target:  5'- cGCCGGGG---GCGGCGgGCaCGgCGGCa -3'
miRNA:   3'- -UGGCCCUccuUGCUGCgCG-GCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 148410 0.66 0.850509
Target:  5'- uGCgaGGGAGccauggugcGGGCGGcCGCGCCGgCGGCu -3'
miRNA:   3'- -UGg-CCCUC---------CUUGCU-GCGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 17239 0.66 0.850509
Target:  5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3'
miRNA:   3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5'
14638 5' -60.3 NC_003521.1 + 17785 0.66 0.850509
Target:  5'- gACCuGGAGGccguCGGCGUGCUgGCCGuGCg -3'
miRNA:   3'- -UGGcCCUCCuu--GCUGCGCGG-CGGU-UG- -5'
14638 5' -60.3 NC_003521.1 + 159777 0.66 0.850509
Target:  5'- uACUGGGGGGuugGACGgaGUCGCgAACg -3'
miRNA:   3'- -UGGCCCUCCuugCUGCg-CGGCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.