miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 240588 0.68 0.712636
Target:  5'- gGCCGGGAucggugagucacGGAaccgguuuccgcgGCGGCGUGCgGCgGGCc -3'
miRNA:   3'- -UGGCCCU------------CCU-------------UGCUGCGCGgCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 239492 0.67 0.794511
Target:  5'- aGCCGGuuGGAcCGAuacagcCGCGCCacucGCCGGCg -3'
miRNA:   3'- -UGGCCcuCCUuGCU------GCGCGG----CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 236142 0.76 0.326487
Target:  5'- -aCGGGGGGGACcGCGCgacGUCGCCGGCg -3'
miRNA:   3'- ugGCCCUCCUUGcUGCG---CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 235642 0.66 0.827439
Target:  5'- aGuuGGGAGGggUGcACccuCGCCGCCc-- -3'
miRNA:   3'- -UggCCCUCCuuGC-UGc--GCGGCGGuug -5'
14638 5' -60.3 NC_003521.1 + 235279 1.08 0.002336
Target:  5'- aACCGGGAGGAACGACGCGCCGCCAACu -3'
miRNA:   3'- -UGGCCCUCCUUGCUGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 233724 0.69 0.675672
Target:  5'- gGCCuGGAGaaGGAgGACGcCGCCGCCGc- -3'
miRNA:   3'- -UGGcCCUC--CUUgCUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 233383 0.69 0.646888
Target:  5'- cGCCGGGAuccGGAGCuGC-CGCUGCCGu- -3'
miRNA:   3'- -UGGCCCU---CCUUGcUGcGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 230318 0.66 0.857857
Target:  5'- cGCCGccuGGGGGGCcACGCcauccCCGCCGGCg -3'
miRNA:   3'- -UGGCc--CUCCUUGcUGCGc----GGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 226937 0.67 0.777241
Target:  5'- cGCCGGGccccccGGcGAaauccAUGGCgGCGCCGCCcGCa -3'
miRNA:   3'- -UGGCCC------UC-CU-----UGCUG-CGCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 226368 0.69 0.685213
Target:  5'- -gCGGGAGcGGCGGCuGaCGCCGCCGc- -3'
miRNA:   3'- ugGCCCUCcUUGCUG-C-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 224699 0.69 0.682355
Target:  5'- cCCGGGcguguGGAAguucacgucccgccCGugGUGCuCGCCGACg -3'
miRNA:   3'- uGGCCCu----CCUU--------------GCugCGCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223955 0.67 0.785072
Target:  5'- gGCCGcGGGGAACGcACGuCGUagacguccgccugCGCCGGCg -3'
miRNA:   3'- -UGGCcCUCCUUGC-UGC-GCG-------------GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223739 0.77 0.262309
Target:  5'- uCCGGuGgcGGGAACGugGguCGCCGCCAGCg -3'
miRNA:   3'- uGGCC-C--UCCUUGCugC--GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223675 0.73 0.443055
Target:  5'- gGCCaGGGAGGGucggGCGaaGCGCGCCGgCAGg -3'
miRNA:   3'- -UGG-CCCUCCU----UGC--UGCGCGGCgGUUg -5'
14638 5' -60.3 NC_003521.1 + 223318 0.71 0.551235
Target:  5'- cGCCGGGccGGGAAccgccgugacCGGCgGCGCCGCUAc- -3'
miRNA:   3'- -UGGCCC--UCCUU----------GCUG-CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 220928 0.66 0.835294
Target:  5'- cACCaGGAacagcagcaGGAucagcgcCGACGCgGCCGUCAGCa -3'
miRNA:   3'- -UGGcCCU---------CCUu------GCUGCG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 219727 0.66 0.835294
Target:  5'- -gCGcGGAGGGAC--CGCGCCGUCGc- -3'
miRNA:   3'- ugGC-CCUCCUUGcuGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 216249 0.72 0.523243
Target:  5'- -gCGGGAGGugGACGAgGagGCCGCCGAg -3'
miRNA:   3'- ugGCCCUCC--UUGCUgCg-CGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 215566 0.68 0.704171
Target:  5'- cACCaGGccAGGGAC--CGCGCCGUCAACc -3'
miRNA:   3'- -UGGcCC--UCCUUGcuGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 213596 0.68 0.703228
Target:  5'- aGCCGGcGAugaccaggcuguuGGggUGGCGguCGCCGCgCAGCa -3'
miRNA:   3'- -UGGCC-CU-------------CCuuGCUGC--GCGGCG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.