miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 213120 0.68 0.732186
Target:  5'- cGCUGGGuGuGGCGugGUGCgGCCGcaGCg -3'
miRNA:   3'- -UGGCCCuCcUUGCugCGCGgCGGU--UG- -5'
14638 5' -60.3 NC_003521.1 + 212815 0.71 0.56067
Target:  5'- uGCUGgaGGAGGAcaGCGAgGUGCCGCUcACg -3'
miRNA:   3'- -UGGC--CCUCCU--UGCUgCGCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 210464 0.68 0.739549
Target:  5'- gAUCGGcaAGGAGaacuuugugguGCGCGCCGCCGACu -3'
miRNA:   3'- -UGGCCc-UCCUUgc---------UGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 210179 0.67 0.785937
Target:  5'- cGCCauGAcGAGCaGGCGCGCCGCCggUg -3'
miRNA:   3'- -UGGccCUcCUUG-CUGCGCGGCGGuuG- -5'
14638 5' -60.3 NC_003521.1 + 208893 0.69 0.675672
Target:  5'- gACCccGAGGAGCGcgaggucaucGCGCGCUGCCuGCc -3'
miRNA:   3'- -UGGccCUCCUUGC----------UGCGCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 208068 0.67 0.806295
Target:  5'- -gCGGGAGGGAagagaaggagguUccuccgcgcccgcugGugGCGUCGCCAACc -3'
miRNA:   3'- ugGCCCUCCUU------------G---------------CugCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 207922 0.66 0.850509
Target:  5'- cGCCGGGG---GCGGCGgGCaCGgCGGCa -3'
miRNA:   3'- -UGGCCCUccuUGCUGCgCG-GCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 207434 0.67 0.802955
Target:  5'- aGCCaGGGA-GAGCGGCG-GCUGgCGGCg -3'
miRNA:   3'- -UGG-CCCUcCUUGCUGCgCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 207337 0.7 0.627635
Target:  5'- uUCGGGGGGcGCGucccucgggucgGCGCgGCCGgCCGACa -3'
miRNA:   3'- uGGCCCUCCuUGC------------UGCG-CGGC-GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 205758 0.73 0.4603
Target:  5'- cGCCcGGAGGaagaccuguGugGugGCGCCGCaCGGCa -3'
miRNA:   3'- -UGGcCCUCC---------UugCugCGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 205004 0.67 0.802955
Target:  5'- -gCGGGAGacccgcuaacGACGGCGUGCCG-CGACg -3'
miRNA:   3'- ugGCCCUCc---------UUGCUGCGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 204894 0.67 0.785937
Target:  5'- gGCCGcgcGGcGGGACGGUG-GCCGCCGAUg -3'
miRNA:   3'- -UGGC---CCuCCUUGCUGCgCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 204724 0.73 0.455089
Target:  5'- gGCgGGGAGGguggcgaggguggugAugGAgGCGCCGCCGc- -3'
miRNA:   3'- -UGgCCCUCC---------------UugCUgCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 204263 0.66 0.835294
Target:  5'- cAUgGGGAGGcuggaGACGGCGCucgacaugaccgGCaUGCCGACg -3'
miRNA:   3'- -UGgCCCUCC-----UUGCUGCG------------CG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 202127 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 201387 0.7 0.637264
Target:  5'- cCCGGGAGccACG--GCGCCGCCuACg -3'
miRNA:   3'- uGGCCCUCcuUGCugCGCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 201012 0.66 0.819426
Target:  5'- cAUCGgcGGAGGAccgccCGGCGCcCCGCCGAg -3'
miRNA:   3'- -UGGC--CCUCCUu----GCUGCGcGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 200647 0.67 0.785937
Target:  5'- aACCuGGAccGGcACGccaACGCGCCGCUAAUc -3'
miRNA:   3'- -UGGcCCU--CCuUGC---UGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 200310 0.7 0.634375
Target:  5'- cGCCGcugcuGGAGGAguucgagaugcgcuGCGgcgccgugGCGCGCCGCgGACa -3'
miRNA:   3'- -UGGC-----CCUCCU--------------UGC--------UGCGCGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 200267 0.68 0.712636
Target:  5'- gGCCGGGAucggugagucacGGAaccgguuuccgcgGCGGCGUGCgGCgGGCc -3'
miRNA:   3'- -UGGCCCU------------CCU-------------UGCUGCGCGgCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.