miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 74575 0.66 0.819426
Target:  5'- -gCGGcGAcGGAGCGGCGgcgcggcguccCGCgGCCGGCg -3'
miRNA:   3'- ugGCC-CU-CCUUGCUGC-----------GCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 92006 0.66 0.819426
Target:  5'- -gCGGGAGcGGCGAgGCGCgGCggCGGCg -3'
miRNA:   3'- ugGCCCUCcUUGCUgCGCGgCG--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 220928 0.66 0.835294
Target:  5'- cACCaGGAacagcagcaGGAucagcgcCGACGCgGCCGUCAGCa -3'
miRNA:   3'- -UGGcCCU---------CCUu------GCUGCG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 125408 0.66 0.810438
Target:  5'- cGCCGcggcgcugaguccGGAGGc-CGugGCgGCCGCCcGCg -3'
miRNA:   3'- -UGGC-------------CCUCCuuGCugCG-CGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 122229 0.66 0.842987
Target:  5'- aGCgCGGGugccGGCGACugaGCGCCGCCAc- -3'
miRNA:   3'- -UG-GCCCucc-UUGCUG---CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 92384 0.66 0.811262
Target:  5'- cACCGGccaccccuGGAGCcgccGGCGCgGCCGCCcGCa -3'
miRNA:   3'- -UGGCCcu------CCUUG----CUGCG-CGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 168999 0.66 0.842987
Target:  5'- -gCGGGAGGcgGGCGACGgG--GCCGGCa -3'
miRNA:   3'- ugGCCCUCC--UUGCUGCgCggCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 142129 0.66 0.835294
Target:  5'- aGCUGGaGGcGGACGACGCGgaaaaCGCCAc- -3'
miRNA:   3'- -UGGCCcUC-CUUGCUGCGCg----GCGGUug -5'
14638 5' -60.3 NC_003521.1 + 963 0.66 0.850509
Target:  5'- cGCUGcaGAGGAAUGGgcuucCGCGCCaCCGACa -3'
miRNA:   3'- -UGGCc-CUCCUUGCU-----GCGCGGcGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 157280 0.66 0.857857
Target:  5'- uCCGGG-GcAACGGCG-GCCGCguACg -3'
miRNA:   3'- uGGCCCuCcUUGCUGCgCGGCGguUG- -5'
14638 5' -60.3 NC_003521.1 + 110355 0.66 0.857857
Target:  5'- cGCCGaagaGcAGGAGCGcugGCGCGUCGUCGAUc -3'
miRNA:   3'- -UGGCc---C-UCCUUGC---UGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 128449 0.66 0.857857
Target:  5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3'
miRNA:   3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 51119 0.66 0.808785
Target:  5'- aGCCGGGAGGGcugguugagacagcACGA-GCGCaGCgaCGACa -3'
miRNA:   3'- -UGGCCCUCCU--------------UGCUgCGCGgCG--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 68333 0.66 0.855671
Target:  5'- cCUGGacGAGGAuuccuaucccgccgACGGCGCaccGCUGCCGGCc -3'
miRNA:   3'- uGGCC--CUCCU--------------UGCUGCG---CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 202127 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 159777 0.66 0.850509
Target:  5'- uACUGGGGGGuugGACGgaGUCGCgAACg -3'
miRNA:   3'- -UGGCCCUCCuugCUGCg-CGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 69411 0.66 0.827439
Target:  5'- gACgCGGGAcGGuGACGGCGCGCa-CCAccACg -3'
miRNA:   3'- -UG-GCCCU-CC-UUGCUGCGCGgcGGU--UG- -5'
14638 5' -60.3 NC_003521.1 + 86202 0.66 0.827439
Target:  5'- cACgGuGGAGGcgaagGGCGGCG-GCaCGCCGGCg -3'
miRNA:   3'- -UGgC-CCUCC-----UUGCUGCgCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 70094 0.66 0.827439
Target:  5'- uGCCgcaGGGcaccuGGc-CGGCGUGCCGCCGAa -3'
miRNA:   3'- -UGG---CCCu----CCuuGCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 58757 0.66 0.855671
Target:  5'- uGCgGGcuGAGGuccagccacugcagGGCGGCGCGC-GCCGGCg -3'
miRNA:   3'- -UGgCC--CUCC--------------UUGCUGCGCGgCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.