miRNA display CGI


Results 41 - 60 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 110355 0.66 0.857857
Target:  5'- cGCCGaagaGcAGGAGCGcugGCGCGUCGUCGAUc -3'
miRNA:   3'- -UGGCc---C-UCCUUGC---UGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 220928 0.66 0.835294
Target:  5'- cACCaGGAacagcagcaGGAucagcgcCGACGCgGCCGUCAGCa -3'
miRNA:   3'- -UGGcCCU---------CCUu------GCUGCG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 202127 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 159777 0.66 0.850509
Target:  5'- uACUGGGGGGuugGACGgaGUCGCgAACg -3'
miRNA:   3'- -UGGCCCUCCuugCUGCg-CGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 68333 0.66 0.855671
Target:  5'- cCUGGacGAGGAuuccuaucccgccgACGGCGCaccGCUGCCGGCc -3'
miRNA:   3'- uGGCC--CUCCU--------------UGCUGCG---CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 111207 0.66 0.832955
Target:  5'- cGCCGGGcGGccGGCGacucgacuauuagaGCGuCGCgGCCGGCg -3'
miRNA:   3'- -UGGCCCuCC--UUGC--------------UGC-GCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 168999 0.66 0.842987
Target:  5'- -gCGGGAGGcgGGCGACGgG--GCCGGCa -3'
miRNA:   3'- ugGCCCUCC--UUGCUGCgCggCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 103879 0.66 0.811262
Target:  5'- cGCCGacaGGGGGAugGGCugccGCGCgGUCAGg -3'
miRNA:   3'- -UGGC---CCUCCUugCUG----CGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 167723 0.66 0.811262
Target:  5'- gGCCacGGuGGAuuGCGugGCGCUgcggugGCCGGCg -3'
miRNA:   3'- -UGGc-CCuCCU--UGCugCGCGG------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 128449 0.66 0.857857
Target:  5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3'
miRNA:   3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 106286 0.66 0.842225
Target:  5'- cGCCGuGGAGGGcaacagcaaccagGCGGCG-GCCGUgcGCa -3'
miRNA:   3'- -UGGC-CCUCCU-------------UGCUGCgCGGCGguUG- -5'
14638 5' -60.3 NC_003521.1 + 7975 0.66 0.835294
Target:  5'- gGCCGGGAGGGuccGCGGCgGCGggggagguaCCGgggCAGCg -3'
miRNA:   3'- -UGGCCCUCCU---UGCUG-CGC---------GGCg--GUUG- -5'
14638 5' -60.3 NC_003521.1 + 88353 0.66 0.835294
Target:  5'- uUCGGGGaGAuCGugGcCGCCGCCuauGACg -3'
miRNA:   3'- uGGCCCUcCUuGCugC-GCGGCGG---UUG- -5'
14638 5' -60.3 NC_003521.1 + 1900 0.66 0.840697
Target:  5'- uACCGGGAcgggcuugucuucgGGGAUGGCGCcgaGCCAGa -3'
miRNA:   3'- -UGGCCCU--------------CCUUGCUGCGcggCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 785 0.66 0.819426
Target:  5'- cAUCGgcGGAGGAccgccCGGCGCcCCGCCGAg -3'
miRNA:   3'- -UGGC--CCUCCUu----GCUGCGcGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 136118 0.66 0.827439
Target:  5'- gACCGcGGucgAGGGcACGuCGaCGCCGCCcACg -3'
miRNA:   3'- -UGGC-CC---UCCU-UGCuGC-GCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 196966 0.66 0.8306
Target:  5'- cCCGGGAGccGGcCGGgGCGCCugugacgggcccgcgGCCGGCg -3'
miRNA:   3'- uGGCCCUC--CUuGCUgCGCGG---------------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 17239 0.66 0.850509
Target:  5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3'
miRNA:   3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5'
14638 5' -60.3 NC_003521.1 + 148410 0.66 0.850509
Target:  5'- uGCgaGGGAGccauggugcGGGCGGcCGCGCCGgCGGCu -3'
miRNA:   3'- -UGg-CCCUC---------CUUGCU-GCGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 219727 0.66 0.835294
Target:  5'- -gCGcGGAGGGAC--CGCGCCGUCGc- -3'
miRNA:   3'- ugGC-CCUCCUUGcuGCGCGGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.