miRNA display CGI


Results 41 - 60 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 75975 0.74 0.385722
Target:  5'- cCCGacGAGGAGCGGCccucgccggGCGCCGUCAGCa -3'
miRNA:   3'- uGGCc-CUCCUUGCUG---------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 132998 0.75 0.347884
Target:  5'- gACCGGGGuuGGGACGGgGacaGCCGCCAccgGCa -3'
miRNA:   3'- -UGGCCCU--CCUUGCUgCg--CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 65629 0.75 0.347884
Target:  5'- cCCGcGAGGAGCuGACGCGC-GCCAGCc -3'
miRNA:   3'- uGGCcCUCCUUG-CUGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 30995 0.81 0.157225
Target:  5'- gAUCGGGAuGGGGCGACGaCGgCGCCGGCg -3'
miRNA:   3'- -UGGCCCU-CCUUGCUGC-GCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 65367 0.82 0.142773
Target:  5'- uCCGGG-GaGACGGCGCGCCGCCGAUc -3'
miRNA:   3'- uGGCCCuCcUUGCUGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 55748 0.72 0.495815
Target:  5'- cGCgCGGGcGGcAGCGACagGCGCgGCCGGCg -3'
miRNA:   3'- -UG-GCCCuCC-UUGCUG--CGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 43632 0.72 0.514032
Target:  5'- -aCGaGGAGGAgGCGGCGgcCGCCGCCGGa -3'
miRNA:   3'- ugGC-CCUCCU-UGCUGC--GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 117942 0.7 0.58826
Target:  5'- --gGGGAGGAggagagcaucaucGCGGCG-GCgGCCAGCa -3'
miRNA:   3'- uggCCCUCCU-------------UGCUGCgCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 157203 0.71 0.579666
Target:  5'- cCCGGGuGGGAGCGACuccaguccCGCCGUCAuACg -3'
miRNA:   3'- uGGCCC-UCCUUGCUGc-------GCGGCGGU-UG- -5'
14638 5' -60.3 NC_003521.1 + 187304 0.71 0.570148
Target:  5'- cCCGGuGGGAGCGGcCGCGUCGgaCAACa -3'
miRNA:   3'- uGGCCcUCCUUGCU-GCGCGGCg-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 173385 0.71 0.570148
Target:  5'- uGCUGGGAGGAGCGGCu--CCGCaAACa -3'
miRNA:   3'- -UGGCCCUCCUUGCUGcgcGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 59407 0.71 0.564456
Target:  5'- cACCuGGAGaaguucguggcacgcGAcaGCGGCGcCGCCGCCGGCa -3'
miRNA:   3'- -UGGcCCUC---------------CU--UGCUGC-GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 65097 0.71 0.56067
Target:  5'- cGCCaGGAGGAA-GA-GCGgCGCCGACa -3'
miRNA:   3'- -UGGcCCUCCUUgCUgCGCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 157959 0.71 0.55689
Target:  5'- gGCUGGGcgacgacggcgcuGGuAGCGACGcCGCCGCCcGCg -3'
miRNA:   3'- -UGGCCCu------------CC-UUGCUGC-GCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 63153 0.71 0.551235
Target:  5'- uGCgCGGGcuGAcgauCGACGCGCCGCCccaGACu -3'
miRNA:   3'- -UG-GCCCucCUu---GCUGCGCGGCGG---UUG- -5'
14638 5' -60.3 NC_003521.1 + 131125 0.71 0.532517
Target:  5'- uGCCGGGaAGGGACaGCGCGaCCccucgGCCGAUc -3'
miRNA:   3'- -UGGCCC-UCCUUGcUGCGC-GG-----CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 180560 0.71 0.5288
Target:  5'- uACCGGGGuGGcGCGAgauguaucuuauaGCGCCGUCAGCc -3'
miRNA:   3'- -UGGCCCU-CCuUGCUg------------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 64673 0.72 0.523243
Target:  5'- cACCGGGcuccgaggagauGGaGAACcuGCGCGCgGCCAACg -3'
miRNA:   3'- -UGGCCC------------UC-CUUGc-UGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 60514 0.72 0.523243
Target:  5'- cCCGGGAGGAgcugcACGGCaucugggagacgGUGCUGCuCAACg -3'
miRNA:   3'- uGGCCCUCCU-----UGCUG------------CGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 216249 0.72 0.523243
Target:  5'- -gCGGGAGGugGACGAgGagGCCGCCGAg -3'
miRNA:   3'- ugGCCCUCC--UUGCUgCg-CGGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.