miRNA display CGI


Results 41 - 60 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 123266 0.72 0.495815
Target:  5'- cGCCGGGAucguaggcuccGAAgUGACGUGCCGCCAGg -3'
miRNA:   3'- -UGGCCCUc----------CUU-GCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 185099 0.72 0.495815
Target:  5'- cGCUGGGAGGcGCuGCGCGCCGaCAu- -3'
miRNA:   3'- -UGGCCCUCCuUGcUGCGCGGCgGUug -5'
14638 5' -60.3 NC_003521.1 + 55748 0.72 0.495815
Target:  5'- cGCgCGGGcGGcAGCGACagGCGCgGCCGGCg -3'
miRNA:   3'- -UG-GCCCuCC-UUGCUG--CGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 187621 0.72 0.504888
Target:  5'- uGCCGGGcgagccGGGCcGCGCGCCGCUGGCc -3'
miRNA:   3'- -UGGCCCuc----CUUGcUGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 43632 0.72 0.514032
Target:  5'- -aCGaGGAGGAgGCGGCGgcCGCCGCCGGa -3'
miRNA:   3'- ugGC-CCUCCU-UGCUGC--GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 120977 0.72 0.514032
Target:  5'- cCCGGGuGGAuaucCGACGCaCCGCCuACc -3'
miRNA:   3'- uGGCCCuCCUu---GCUGCGcGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 198185 0.72 0.520473
Target:  5'- cCCGGGuAGuGAugaugaauuccaugGCGGCgacgGCGCCGCCGGCg -3'
miRNA:   3'- uGGCCC-UC-CU--------------UGCUG----CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 64673 0.72 0.523243
Target:  5'- cACCGGGcuccgaggagauGGaGAACcuGCGCGCgGCCAACg -3'
miRNA:   3'- -UGGCCC------------UC-CUUGc-UGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 60514 0.72 0.523243
Target:  5'- cCCGGGAGGAgcugcACGGCaucugggagacgGUGCUGCuCAACg -3'
miRNA:   3'- uGGCCCUCCU-----UGCUG------------CGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 216249 0.72 0.523243
Target:  5'- -gCGGGAGGugGACGAgGagGCCGCCGAg -3'
miRNA:   3'- ugGCCCUCC--UUGCUgCg-CGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 180560 0.71 0.5288
Target:  5'- uACCGGGGuGGcGCGAgauguaucuuauaGCGCCGUCAGCc -3'
miRNA:   3'- -UGGCCCU-CCuUGCUg------------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 122715 0.71 0.529728
Target:  5'- gGCU-GGAGGcggucguggucgugGGCGACgGCGCCGCCGAUg -3'
miRNA:   3'- -UGGcCCUCC--------------UUGCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 131125 0.71 0.532517
Target:  5'- uGCCGGGaAGGGACaGCGCGaCCccucgGCCGAUc -3'
miRNA:   3'- -UGGCCC-UCCUUGcUGCGC-GG-----CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 49675 0.71 0.532517
Target:  5'- gGCCGGGcGaGcGCGGCGCugucGCCGUCAGCc -3'
miRNA:   3'- -UGGCCCuC-CuUGCUGCG----CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 172460 0.71 0.541849
Target:  5'- --gGGGAGGcagggccggcAGCGGUGCGCCGUCGGCg -3'
miRNA:   3'- uggCCCUCC----------UUGCUGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 63153 0.71 0.551235
Target:  5'- uGCgCGGGcuGAcgauCGACGCGCCGCCccaGACu -3'
miRNA:   3'- -UG-GCCCucCUu---GCUGCGCGGCGG---UUG- -5'
14638 5' -60.3 NC_003521.1 + 223318 0.71 0.551235
Target:  5'- cGCCGGGccGGGAAccgccgugacCGGCgGCGCCGCUAc- -3'
miRNA:   3'- -UGGCCC--UCCUU----------GCUG-CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 177803 0.71 0.551235
Target:  5'- cGCUGGuGGGcguCGugGgCGCCGCCGGCu -3'
miRNA:   3'- -UGGCCcUCCuu-GCugC-GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 157959 0.71 0.55689
Target:  5'- gGCUGGGcgacgacggcgcuGGuAGCGACGcCGCCGCCcGCg -3'
miRNA:   3'- -UGGCCCu------------CC-UUGCUGC-GCGGCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 65097 0.71 0.56067
Target:  5'- cGCCaGGAGGAA-GA-GCGgCGCCGACa -3'
miRNA:   3'- -UGGcCCUCCUUgCUgCGCgGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.