miRNA display CGI


Results 41 - 60 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 32820 0.69 0.660344
Target:  5'- cGCCGGGAGcGucCGGCGgaauuccuuguuuuaCGCCGCUAAa -3'
miRNA:   3'- -UGGCCCUC-CuuGCUGC---------------GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 33605 0.73 0.4603
Target:  5'- cGCaCGGGAGGAgaggaaccggAgGACGaUGCCGCCGAg -3'
miRNA:   3'- -UG-GCCCUCCU----------UgCUGC-GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 35389 0.68 0.750492
Target:  5'- cUCGGcGAGG-ACG-CGgGCCGCgCGACa -3'
miRNA:   3'- uGGCC-CUCCuUGCuGCgCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 36157 0.69 0.694716
Target:  5'- cCCGaGGAGGAggacaccccggACGGCGUGCCcacgcaccugGCCGAg -3'
miRNA:   3'- uGGC-CCUCCU-----------UGCUGCGCGG----------CGGUUg -5'
14638 5' -60.3 NC_003521.1 + 39009 0.68 0.704171
Target:  5'- gUCGaGGccGGAGCGG-GCGCCGCCGAa -3'
miRNA:   3'- uGGC-CCu-CCUUGCUgCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 39264 0.66 0.827439
Target:  5'- aGCCGGuuGGAcCGAuacagcCGCGCCacgucGCCGGCg -3'
miRNA:   3'- -UGGCCcuCCUuGCU------GCGCGG-----CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 40778 0.7 0.598795
Target:  5'- aGCCGGuGAGGcAGCGuuGCGUCacaggcucuGCCAGCg -3'
miRNA:   3'- -UGGCC-CUCC-UUGCugCGCGG---------CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 41625 0.68 0.750492
Target:  5'- gACCGuGGucuGGGGCGugGCGCCcgugGUCAu- -3'
miRNA:   3'- -UGGC-CCu--CCUUGCugCGCGG----CGGUug -5'
14638 5' -60.3 NC_003521.1 + 43229 0.7 0.627635
Target:  5'- uACCGGGcagcgGGGAAgGGCGaguaGCagCGCCAGCu -3'
miRNA:   3'- -UGGCCC-----UCCUUgCUGCg---CG--GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 43632 0.72 0.514032
Target:  5'- -aCGaGGAGGAgGCGGCGgcCGCCGCCGGa -3'
miRNA:   3'- ugGC-CCUCCU-UGCUGC--GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 44072 0.7 0.637264
Target:  5'- gGCCGGGGcagcagacGGuGCaGGCGcCGCCGCCAc- -3'
miRNA:   3'- -UGGCCCU--------CCuUG-CUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 45522 0.68 0.741381
Target:  5'- aGCCGcauGGAcuuGGAGCgGGCGCcCCGUCAGCg -3'
miRNA:   3'- -UGGC---CCU---CCUUG-CUGCGcGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 46063 0.69 0.646888
Target:  5'- cACCGGGcGGGAUGAgguCGCGaCGcCCGGCg -3'
miRNA:   3'- -UGGCCCuCCUUGCU---GCGCgGC-GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 48006 0.68 0.713574
Target:  5'- cGCCGGGcuucuGCGGC-UGCUGCCAGCg -3'
miRNA:   3'- -UGGCCCuccu-UGCUGcGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 48363 0.66 0.842987
Target:  5'- cGCCGuccuGGAAacCGGCGcCGCCGCCAu- -3'
miRNA:   3'- -UGGCccu-CCUU--GCUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 48717 0.73 0.443055
Target:  5'- gGCCGGGAGaGGugGAgaCGCCGgCGACg -3'
miRNA:   3'- -UGGCCCUC-CUugCUgcGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 48923 0.73 0.433727
Target:  5'- aGCCGGuguccguGAaGGACGugGCGCCGCCGc- -3'
miRNA:   3'- -UGGCC-------CUcCUUGCugCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 49675 0.71 0.532517
Target:  5'- gGCCGGGcGaGcGCGGCGCugucGCCGUCAGCc -3'
miRNA:   3'- -UGGCCCuC-CuUGCUGCG----CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 50320 0.67 0.800436
Target:  5'- aGCCaGGGAGGcAGCGGguccucggcccguuUGCGCUGgauCCAACg -3'
miRNA:   3'- -UGG-CCCUCC-UUGCU--------------GCGCGGC---GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 51119 0.66 0.808785
Target:  5'- aGCCGGGAGGGcugguugagacagcACGA-GCGCaGCgaCGACa -3'
miRNA:   3'- -UGGCCCUCCU--------------UGCUgCGCGgCG--GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.