miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 17028 0.66 0.812085
Target:  5'- -gCGGGAagaGGAGCGACGacaacggcagcaccaGCagCGCCGACg -3'
miRNA:   3'- ugGCCCU---CCUUGCUGCg--------------CG--GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 17239 0.66 0.850509
Target:  5'- gGCCGaGGuGGA--GGCGCGCCGUa--- -3'
miRNA:   3'- -UGGC-CCuCCUugCUGCGCGGCGguug -5'
14638 5' -60.3 NC_003521.1 + 17466 0.7 0.626673
Target:  5'- cGCUcGGAGGAgagACGACggcaccgguagcgGCGCCGCCGGu -3'
miRNA:   3'- -UGGcCCUCCU---UGCUG-------------CGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 17748 0.66 0.827439
Target:  5'- gGCCGaGGccgGGGAACuGGcCGUaCCGCCGGCg -3'
miRNA:   3'- -UGGC-CC---UCCUUG-CU-GCGcGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 17785 0.66 0.850509
Target:  5'- gACCuGGAGGccguCGGCGUGCUgGCCGuGCg -3'
miRNA:   3'- -UGGcCCUCCuu--GCUGCGCGG-CGGU-UG- -5'
14638 5' -60.3 NC_003521.1 + 18175 0.7 0.598795
Target:  5'- -gCGuGGAGGcGCuGCGCGCCuGCCGGCc -3'
miRNA:   3'- ugGC-CCUCCuUGcUGCGCGG-CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 18218 0.68 0.731262
Target:  5'- gGCCGcGGAGuuccgcGAGCuGCGCGuuuucauCCGCCAGCg -3'
miRNA:   3'- -UGGC-CCUC------CUUGcUGCGC-------GGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 18972 0.74 0.417887
Target:  5'- -aCGaGGAGGGggucgAgGACGCGCCGCgCGACg -3'
miRNA:   3'- ugGC-CCUCCU-----UgCUGCGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 19045 0.68 0.732186
Target:  5'- cGCUGGagcuucGAGGAcgGCGGCGCGgCGCaGACg -3'
miRNA:   3'- -UGGCC------CUCCU--UGCUGCGCgGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 19103 0.76 0.312773
Target:  5'- gACgGGGAGGGagACGACGCggguggcggGCCGCCggUg -3'
miRNA:   3'- -UGgCCCUCCU--UGCUGCG---------CGGCGGuuG- -5'
14638 5' -60.3 NC_003521.1 + 19452 0.66 0.848271
Target:  5'- --gGGGAGGcGCGGCgggaccaugucgcuGCGCgGCCAGg -3'
miRNA:   3'- uggCCCUCCuUGCUG--------------CGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 22159 0.87 0.059775
Target:  5'- uACCGGGAgacgguggagaGGGACGAgGCGCCGCCGGCc -3'
miRNA:   3'- -UGGCCCU-----------CCUUGCUgCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 24190 0.69 0.675672
Target:  5'- aGCCGGGcGGcAugGGCGgaaCGUCGuCCAACa -3'
miRNA:   3'- -UGGCCCuCC-UugCUGC---GCGGC-GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 27566 0.67 0.777241
Target:  5'- uCCGGGcGGu-CGACGCGUCGgacuCCGAUg -3'
miRNA:   3'- uGGCCCuCCuuGCUGCGCGGC----GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 28715 0.66 0.811262
Target:  5'- gACCGuGcGccaGAugGugGCGCaCGCCGACa -3'
miRNA:   3'- -UGGC-C-Cuc-CUugCugCGCG-GCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 28955 0.68 0.754111
Target:  5'- uCCGGGGGGAggaugucuguccgcgAuCGugGuCGCUGCCGuACg -3'
miRNA:   3'- uGGCCCUCCU---------------U-GCugC-GCGGCGGU-UG- -5'
14638 5' -60.3 NC_003521.1 + 30903 0.74 0.385722
Target:  5'- uACCuGGGGGAACGAacguaGCGCCaGCCAc- -3'
miRNA:   3'- -UGGcCCUCCUUGCUg----CGCGG-CGGUug -5'
14638 5' -60.3 NC_003521.1 + 30995 0.81 0.157225
Target:  5'- gAUCGGGAuGGGGCGACGaCGgCGCCGGCg -3'
miRNA:   3'- -UGGCCCU-CCUUGCUGC-GCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 32364 0.67 0.802116
Target:  5'- -gCGGGAcGGGGCuuuugguGGCGCGUgGCCAGg -3'
miRNA:   3'- ugGCCCU-CCUUG-------CUGCGCGgCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 32722 0.66 0.827439
Target:  5'- -gUGGGGGGu-UGGCGaCGCCaCCAGCg -3'
miRNA:   3'- ugGCCCUCCuuGCUGC-GCGGcGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.