miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 131125 0.71 0.532517
Target:  5'- uGCCGGGaAGGGACaGCGCGaCCccucgGCCGAUc -3'
miRNA:   3'- -UGGCCC-UCCUUGcUGCGC-GG-----CGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 180560 0.71 0.5288
Target:  5'- uACCGGGGuGGcGCGAgauguaucuuauaGCGCCGUCAGCc -3'
miRNA:   3'- -UGGCCCU-CCuUGCUg------------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 166789 0.74 0.4016
Target:  5'- gGCgGGGucGGACGAUGcCGCCGCCGcuGCu -3'
miRNA:   3'- -UGgCCCucCUUGCUGC-GCGGCGGU--UG- -5'
14638 5' -60.3 NC_003521.1 + 136715 0.74 0.4016
Target:  5'- cGCCGccGAGGAugGcaGCGCGCCGCCuuccGCg -3'
miRNA:   3'- -UGGCc-CUCCUugC--UGCGCGGCGGu---UG- -5'
14638 5' -60.3 NC_003521.1 + 113699 0.74 0.393609
Target:  5'- cGCCuGGAGGugcACGACGCGCUGCUc-- -3'
miRNA:   3'- -UGGcCCUCCu--UGCUGCGCGGCGGuug -5'
14638 5' -60.3 NC_003521.1 + 75975 0.74 0.385722
Target:  5'- cCCGacGAGGAGCGGCccucgccggGCGCCGUCAGCa -3'
miRNA:   3'- uGGCc-CUCCUUGCUG---------CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 132998 0.75 0.347884
Target:  5'- gACCGGGGuuGGGACGGgGacaGCCGCCAccgGCa -3'
miRNA:   3'- -UGGCCCU--CCUUGCUgCg--CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 65629 0.75 0.347884
Target:  5'- cCCGcGAGGAGCuGACGCGC-GCCAGCc -3'
miRNA:   3'- uGGCcCUCCUUG-CUGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 30995 0.81 0.157225
Target:  5'- gAUCGGGAuGGGGCGACGaCGgCGCCGGCg -3'
miRNA:   3'- -UGGCCCU-CCUUGCUGC-GCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 65367 0.82 0.142773
Target:  5'- uCCGGG-GaGACGGCGCGCCGCCGAUc -3'
miRNA:   3'- uGGCCCuCcUUGCUGCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 171191 0.74 0.417887
Target:  5'- uGCCGGGAacaAAUGACguGCGCCGCUGACg -3'
miRNA:   3'- -UGGCCCUcc-UUGCUG--CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 113365 0.73 0.434571
Target:  5'- gGCCGGGGGcGAggaggaggguuACGGCGgaCGCCGCgGGCg -3'
miRNA:   3'- -UGGCCCUC-CU-----------UGCUGC--GCGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 64673 0.72 0.523243
Target:  5'- cACCGGGcuccgaggagauGGaGAACcuGCGCGCgGCCAACg -3'
miRNA:   3'- -UGGCCC------------UC-CUUGc-UGCGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 60514 0.72 0.523243
Target:  5'- cCCGGGAGGAgcugcACGGCaucugggagacgGUGCUGCuCAACg -3'
miRNA:   3'- uGGCCCUCCU-----UGCUG------------CGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 216249 0.72 0.523243
Target:  5'- -gCGGGAGGugGACGAgGagGCCGCCGAg -3'
miRNA:   3'- ugGCCCUCC--UUGCUgCg-CGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 43632 0.72 0.514032
Target:  5'- -aCGaGGAGGAgGCGGCGgcCGCCGCCGGa -3'
miRNA:   3'- ugGC-CCUCCU-UGCUGC--GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 55748 0.72 0.495815
Target:  5'- cGCgCGGGcGGcAGCGACagGCGCgGCCGGCg -3'
miRNA:   3'- -UG-GCCCuCC-UUGCUG--CGCGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 187634 0.72 0.477895
Target:  5'- cACC-GGAGGGuucacCGACgGCGUCGCCGACc -3'
miRNA:   3'- -UGGcCCUCCUu----GCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 150871 0.72 0.477895
Target:  5'- aGCCGGGcGaGAACGAgGUGCgGCCGcACg -3'
miRNA:   3'- -UGGCCCuC-CUUGCUgCGCGgCGGU-UG- -5'
14638 5' -60.3 NC_003521.1 + 145867 0.73 0.469056
Target:  5'- cCCGGcGGcGGGCGGCGCcgacgacgagGCCGCCGGCg -3'
miRNA:   3'- uGGCCcUC-CUUGCUGCG----------CGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.