miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 53218 0.73 0.4603
Target:  5'- cGCCGGGGaguccGcGGGCGAaGCGaCCGCCGGCg -3'
miRNA:   3'- -UGGCCCU-----C-CUUGCUgCGC-GGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 13895 0.73 0.45943
Target:  5'- cGCCGGGGGGccCGGCGCggaggggGCCGCgGAg -3'
miRNA:   3'- -UGGCCCUCCuuGCUGCG-------CGGCGgUUg -5'
14638 5' -60.3 NC_003521.1 + 139267 0.74 0.393609
Target:  5'- -gCGGG-GGGACGACGaCGCCGUCGu- -3'
miRNA:   3'- ugGCCCuCCUUGCUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 19103 0.76 0.312773
Target:  5'- gACgGGGAGGGagACGACGCggguggcggGCCGCCggUg -3'
miRNA:   3'- -UGgCCCUCCU--UGCUGCG---------CGGCGGuuG- -5'
14638 5' -60.3 NC_003521.1 + 177803 0.71 0.551235
Target:  5'- cGCUGGuGGGcguCGugGgCGCCGCCGGCu -3'
miRNA:   3'- -UGGCCcUCCuu-GCugC-GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 185099 0.72 0.495815
Target:  5'- cGCUGGGAGGcGCuGCGCGCCGaCAu- -3'
miRNA:   3'- -UGGCCCUCCuUGcUGCGCGGCgGUug -5'
14638 5' -60.3 NC_003521.1 + 104087 0.73 0.451633
Target:  5'- gGCgCGGcAGGAcgcggaagGCGGCGCGCUGCCAGu -3'
miRNA:   3'- -UG-GCCcUCCU--------UGCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 223739 0.77 0.262309
Target:  5'- uCCGGuGgcGGGAACGugGguCGCCGCCAGCg -3'
miRNA:   3'- uGGCC-C--UCCUUGCugC--GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 123266 0.72 0.495815
Target:  5'- cGCCGGGAucguaggcuccGAAgUGACGUGCCGCCAGg -3'
miRNA:   3'- -UGGCCCUc----------CUU-GCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 91275 0.81 0.14984
Target:  5'- aACCGGGgaagaagaAGGAGCG-CGCGCCGcCCGACu -3'
miRNA:   3'- -UGGCCC--------UCCUUGCuGCGCGGC-GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 204724 0.73 0.455089
Target:  5'- gGCgGGGAGGguggcgaggguggugAugGAgGCGCCGCCGc- -3'
miRNA:   3'- -UGgCCCUCC---------------UugCUgCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 100574 0.73 0.468176
Target:  5'- gGCaCGaGGAGGAcgACGACGCggagggaGCCGCCAu- -3'
miRNA:   3'- -UG-GC-CCUCCU--UGCUGCG-------CGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 48923 0.73 0.433727
Target:  5'- aGCCGGuguccguGAaGGACGugGCGCCGCCGc- -3'
miRNA:   3'- -UGGCC-------CUcCUUGCugCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 98578 0.74 0.417887
Target:  5'- gGCCGaGGAGGAGCGG-GC-CCGCgAGCg -3'
miRNA:   3'- -UGGC-CCUCCUUGCUgCGcGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 110683 0.75 0.355236
Target:  5'- cGCuCGGuGGcGGcAGCGGCgGCGCCGCCGACg -3'
miRNA:   3'- -UG-GCC-CU-CC-UUGCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 166235 0.76 0.319575
Target:  5'- cGCCGGccgcGGGACGcCGCGCCGCCGc- -3'
miRNA:   3'- -UGGCCcu--CCUUGCuGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 157919 0.71 0.570148
Target:  5'- gACCGGaugaGAGuGGCGACGCGCCaaCAGCg -3'
miRNA:   3'- -UGGCC----CUCcUUGCUGCGCGGcgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223318 0.71 0.551235
Target:  5'- cGCCGGGccGGGAAccgccgugacCGGCgGCGCCGCUAc- -3'
miRNA:   3'- -UGGCCC--UCCUU----------GCUG-CGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 122715 0.71 0.529728
Target:  5'- gGCU-GGAGGcggucguggucgugGGCGACgGCGCCGCCGAUg -3'
miRNA:   3'- -UGGcCCUCC--------------UUGCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 187621 0.72 0.504888
Target:  5'- uGCCGGGcgagccGGGCcGCGCGCCGCUGGCc -3'
miRNA:   3'- -UGGCCCuc----CUUGcUGCGCGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.