miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 22159 0.87 0.059775
Target:  5'- uACCGGGAgacgguggagaGGGACGAgGCGCCGCCGGCc -3'
miRNA:   3'- -UGGCCCU-----------CCUUGCUgCGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 104087 0.73 0.451633
Target:  5'- gGCgCGGcAGGAcgcggaagGCGGCGCGCUGCCAGu -3'
miRNA:   3'- -UG-GCCcUCCU--------UGCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 13895 0.73 0.45943
Target:  5'- cGCCGGGGGGccCGGCGCggaggggGCCGCgGAg -3'
miRNA:   3'- -UGGCCCUCCuuGCUGCG-------CGGCGgUUg -5'
14638 5' -60.3 NC_003521.1 + 128449 0.66 0.857857
Target:  5'- aGCCaGGuGGAcgagACGcCGCaGCCGCCGcguGCg -3'
miRNA:   3'- -UGGcCCuCCU----UGCuGCG-CGGCGGU---UG- -5'
14638 5' -60.3 NC_003521.1 + 166235 0.76 0.319575
Target:  5'- cGCCGGccgcGGGACGcCGCGCCGCCGc- -3'
miRNA:   3'- -UGGCCcu--CCUUGCuGCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 236142 0.76 0.326487
Target:  5'- -aCGGGGGGGACcGCGCgacGUCGCCGGCg -3'
miRNA:   3'- ugGCCCUCCUUGcUGCG---CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 110683 0.75 0.355236
Target:  5'- cGCuCGGuGGcGGcAGCGGCgGCGCCGCCGACg -3'
miRNA:   3'- -UG-GCC-CU-CC-UUGCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 30903 0.74 0.385722
Target:  5'- uACCuGGGGGAACGAacguaGCGCCaGCCAc- -3'
miRNA:   3'- -UGGcCCUCCUUGCUg----CGCGG-CGGUug -5'
14638 5' -60.3 NC_003521.1 + 98578 0.74 0.417887
Target:  5'- gGCCGaGGAGGAGCGG-GC-CCGCgAGCg -3'
miRNA:   3'- -UGGC-CCUCCUUGCUgCGcGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 48717 0.73 0.443055
Target:  5'- gGCCGGGAGaGGugGAgaCGCCGgCGACg -3'
miRNA:   3'- -UGGCCCUC-CUugCUgcGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 197247 0.73 0.425347
Target:  5'- cGCCGcccGAGGAGCggugcuuGACGCGgCGCCGGCg -3'
miRNA:   3'- -UGGCc--CUCCUUG-------CUGCGCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 139267 0.74 0.393609
Target:  5'- -gCGGG-GGGACGACGaCGCCGUCGu- -3'
miRNA:   3'- ugGCCCuCCUUGCUGC-GCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 91275 0.81 0.14984
Target:  5'- aACCGGGgaagaagaAGGAGCG-CGCGCCGcCCGACu -3'
miRNA:   3'- -UGGCCC--------UCCUUGCuGCGCGGC-GGUUG- -5'
14638 5' -60.3 NC_003521.1 + 48923 0.73 0.433727
Target:  5'- aGCCGGuguccguGAaGGACGugGCGCCGCCGc- -3'
miRNA:   3'- -UGGCC-------CUcCUUGCugCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 223739 0.77 0.262309
Target:  5'- uCCGGuGgcGGGAACGugGguCGCCGCCAGCg -3'
miRNA:   3'- uGGCC-C--UCCUUGCugC--GCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 166647 0.74 0.385722
Target:  5'- cGCCGGGcGccGCGGCGCaGCgGCCAGCg -3'
miRNA:   3'- -UGGCCCuCcuUGCUGCG-CGgCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223675 0.73 0.443055
Target:  5'- gGCCaGGGAGGGucggGCGaaGCGCGCCGgCAGg -3'
miRNA:   3'- -UGG-CCCUCCU----UGC--UGCGCGGCgGUUg -5'
14638 5' -60.3 NC_003521.1 + 204724 0.73 0.455089
Target:  5'- gGCgGGGAGGguggcgaggguggugAugGAgGCGCCGCCGc- -3'
miRNA:   3'- -UGgCCCUCC---------------UugCUgCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 19103 0.76 0.312773
Target:  5'- gACgGGGAGGGagACGACGCggguggcggGCCGCCggUg -3'
miRNA:   3'- -UGgCCCUCCU--UGCUGCG---------CGGCGGuuG- -5'
14638 5' -60.3 NC_003521.1 + 102350 0.75 0.347884
Target:  5'- -aCGGGcGGcagguggcaGAUGugGCGCCGCCGGCg -3'
miRNA:   3'- ugGCCCuCC---------UUGCugCGCGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.