miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14638 5' -60.3 NC_003521.1 + 98578 0.74 0.417887
Target:  5'- gGCCGaGGAGGAGCGG-GC-CCGCgAGCg -3'
miRNA:   3'- -UGGC-CCUCCUUGCUgCGcGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 171191 0.74 0.417887
Target:  5'- uGCCGGGAacaAAUGACguGCGCCGCUGACg -3'
miRNA:   3'- -UGGCCCUcc-UUGCUG--CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 18972 0.74 0.417887
Target:  5'- -aCGaGGAGGGggucgAgGACGCGCCGCgCGACg -3'
miRNA:   3'- ugGC-CCUCCU-----UgCUGCGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 197247 0.73 0.425347
Target:  5'- cGCCGcccGAGGAGCggugcuuGACGCGgCGCCGGCg -3'
miRNA:   3'- -UGGCc--CUCCUUG-------CUGCGCgGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 48923 0.73 0.433727
Target:  5'- aGCCGGuguccguGAaGGACGugGCGCCGCCGc- -3'
miRNA:   3'- -UGGCC-------CUcCUUGCugCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 113365 0.73 0.434571
Target:  5'- gGCCGGGGGcGAggaggaggguuACGGCGgaCGCCGCgGGCg -3'
miRNA:   3'- -UGGCCCUC-CU-----------UGCUGC--GCGGCGgUUG- -5'
14638 5' -60.3 NC_003521.1 + 48717 0.73 0.443055
Target:  5'- gGCCGGGAGaGGugGAgaCGCCGgCGACg -3'
miRNA:   3'- -UGGCCCUC-CUugCUgcGCGGCgGUUG- -5'
14638 5' -60.3 NC_003521.1 + 223675 0.73 0.443055
Target:  5'- gGCCaGGGAGGGucggGCGaaGCGCGCCGgCAGg -3'
miRNA:   3'- -UGG-CCCUCCU----UGC--UGCGCGGCgGUUg -5'
14638 5' -60.3 NC_003521.1 + 104087 0.73 0.451633
Target:  5'- gGCgCGGcAGGAcgcggaagGCGGCGCGCUGCCAGu -3'
miRNA:   3'- -UG-GCCcUCCU--------UGCUGCGCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 204724 0.73 0.455089
Target:  5'- gGCgGGGAGGguggcgaggguggugAugGAgGCGCCGCCGc- -3'
miRNA:   3'- -UGgCCCUCC---------------UugCUgCGCGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 13895 0.73 0.45943
Target:  5'- cGCCGGGGGGccCGGCGCggaggggGCCGCgGAg -3'
miRNA:   3'- -UGGCCCUCCuuGCUGCG-------CGGCGgUUg -5'
14638 5' -60.3 NC_003521.1 + 53218 0.73 0.4603
Target:  5'- cGCCGGGGaguccGcGGGCGAaGCGaCCGCCGGCg -3'
miRNA:   3'- -UGGCCCU-----C-CUUGCUgCGC-GGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 205758 0.73 0.4603
Target:  5'- cGCCcGGAGGaagaccuguGugGugGCGCCGCaCGGCa -3'
miRNA:   3'- -UGGcCCUCC---------UugCugCGCGGCG-GUUG- -5'
14638 5' -60.3 NC_003521.1 + 33605 0.73 0.4603
Target:  5'- cGCaCGGGAGGAgaggaaccggAgGACGaUGCCGCCGAg -3'
miRNA:   3'- -UG-GCCCUCCU----------UgCUGC-GCGGCGGUUg -5'
14638 5' -60.3 NC_003521.1 + 100574 0.73 0.468176
Target:  5'- gGCaCGaGGAGGAcgACGACGCggagggaGCCGCCAu- -3'
miRNA:   3'- -UG-GC-CCUCCU--UGCUGCG-------CGGCGGUug -5'
14638 5' -60.3 NC_003521.1 + 145867 0.73 0.469056
Target:  5'- cCCGGcGGcGGGCGGCGCcgacgacgagGCCGCCGGCg -3'
miRNA:   3'- uGGCCcUC-CUUGCUGCG----------CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 191240 0.73 0.469056
Target:  5'- cUUGGGAGGAgGCGGCGcCGCgGCCcACg -3'
miRNA:   3'- uGGCCCUCCU-UGCUGC-GCGgCGGuUG- -5'
14638 5' -60.3 NC_003521.1 + 123593 0.73 0.469056
Target:  5'- cGCCGGGAGc--CGcCGCgGCCGUCAGCg -3'
miRNA:   3'- -UGGCCCUCcuuGCuGCG-CGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 187634 0.72 0.477895
Target:  5'- cACC-GGAGGGuucacCGACgGCGUCGCCGACc -3'
miRNA:   3'- -UGGcCCUCCUu----GCUG-CGCGGCGGUUG- -5'
14638 5' -60.3 NC_003521.1 + 150871 0.72 0.477895
Target:  5'- aGCCGGGcGaGAACGAgGUGCgGCCGcACg -3'
miRNA:   3'- -UGGCCCuC-CUUGCUgCGCGgCGGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.