miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 155331 0.69 0.956326
Target:  5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3'
miRNA:   3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 140190 0.72 0.866122
Target:  5'- gGCGGGACG-GCCGGuUUUCGAGguCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcAAAGCUCguG- -5'
14640 3' -52.5 NC_003521.1 + 97512 0.66 0.995686
Target:  5'- aGCGAGACcucgcagaGCuCGGGguggUCGAGgCGCu -3'
miRNA:   3'- gCGCUUUGua------CG-GCCCaa--AGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 166226 0.66 0.992366
Target:  5'- gGCGAGGCGcGCCGGccg-CGGGaCGCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcaaaGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 173385 0.68 0.979898
Target:  5'- uCGgGggGCAUGCUGGuGUUgcucaGGGCGu -3'
miRNA:   3'- -GCgCuuUGUACGGCC-CAAag---CUCGUg -5'
14640 3' -52.5 NC_003521.1 + 50281 0.75 0.77306
Target:  5'- aGCGGcgcuucacgGACAUGCCGuuaGGUUUCGGGC-Cg -3'
miRNA:   3'- gCGCU---------UUGUACGGC---CCAAAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 239444 0.67 0.99128
Target:  5'- uCGUaGAACGUGUCGGGguccaGcAGCACg -3'
miRNA:   3'- -GCGcUUUGUACGGCCCaaag-C-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 195753 0.75 0.763685
Target:  5'- aCGCGGAAgAUGuCCGGGUUUCc-GUACa -3'
miRNA:   3'- -GCGCUUUgUAC-GGCCCAAAGcuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 45737 0.81 0.448442
Target:  5'- aCGCGGGuCAgGCCGGGUUUUGuAGCGCg -3'
miRNA:   3'- -GCGCUUuGUaCGGCCCAAAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 74470 0.68 0.979898
Target:  5'- aGCGAGcACGUcCUGGGcUUCGAGCu- -3'
miRNA:   3'- gCGCUU-UGUAcGGCCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 36292 0.66 0.994216
Target:  5'- aGCaGAAAaacgagGCCGGGUg--GGGCGCa -3'
miRNA:   3'- gCG-CUUUgua---CGGCCCAaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 149160 0.7 0.934545
Target:  5'- uGCGGAAUgcGCCaGGGagccgCGGGCACg -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 111163 0.72 0.893542
Target:  5'- gCGUGAGauuguacgaauucACGUGCaCGGGgacgUUGAGCACc -3'
miRNA:   3'- -GCGCUU-------------UGUACG-GCCCaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 200804 0.67 0.988743
Target:  5'- uGCGc-ACGUGCCuGGGcUUCGAGUc- -3'
miRNA:   3'- gCGCuuUGUACGG-CCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 74898 0.66 0.99325
Target:  5'- gCGCGAGACGgugGCgGcGGUggagUCGgcccggcAGCGCg -3'
miRNA:   3'- -GCGCUUUGUa--CGgC-CCAa---AGC-------UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 168470 0.66 0.995686
Target:  5'- gGCGAGGCGgaagaugaccUGCUGGuGcagUUCGAGC-Cg -3'
miRNA:   3'- gCGCUUUGU----------ACGGCC-Ca--AAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 106553 0.69 0.969728
Target:  5'- gCGCGAGugG-GCCGGucgcgaGAGCACg -3'
miRNA:   3'- -GCGCUUugUaCGGCCcaaag-CUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 86740 0.67 0.987277
Target:  5'- aCGCGGAACAUgaggagGCUGGGcacCGAgagGCGCg -3'
miRNA:   3'- -GCGCUUUGUA------CGGCCCaaaGCU---CGUG- -5'
14640 3' -52.5 NC_003521.1 + 119583 0.67 0.985667
Target:  5'- uGCaGGAACAcGCUGGGcggCGGGUGCa -3'
miRNA:   3'- gCG-CUUUGUaCGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 154002 0.67 0.985667
Target:  5'- uGCGcAGCAcGCaCGGGUcgCGcAGCACc -3'
miRNA:   3'- gCGCuUUGUaCG-GCCCAaaGC-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.