miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 45737 0.81 0.448442
Target:  5'- aCGCGGGuCAgGCCGGGUUUUGuAGCGCg -3'
miRNA:   3'- -GCGCUUuGUaCGGCCCAAAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 173385 0.68 0.979898
Target:  5'- uCGgGggGCAUGCUGGuGUUgcucaGGGCGu -3'
miRNA:   3'- -GCgCuuUGUACGGCC-CAAag---CUCGUg -5'
14640 3' -52.5 NC_003521.1 + 102982 0.68 0.979898
Target:  5'- gGCGggGCGgcccaGCCGcGGcg-UGAGCGCc -3'
miRNA:   3'- gCGCuuUGUa----CGGC-CCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 168470 0.66 0.995686
Target:  5'- gGCGAGGCGgaagaugaccUGCUGGuGcagUUCGAGC-Cg -3'
miRNA:   3'- gCGCUUUGU----------ACGGCC-Ca--AAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 111163 0.72 0.893542
Target:  5'- gCGUGAGauuguacgaauucACGUGCaCGGGgacgUUGAGCACc -3'
miRNA:   3'- -GCGCUU-------------UGUACG-GCCCaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 36532 0.72 0.900664
Target:  5'- cCGcCGGucgucGGCAUGCCGGucaugUCGAGCGCc -3'
miRNA:   3'- -GC-GCU-----UUGUACGGCCcaa--AGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 149160 0.7 0.934545
Target:  5'- uGCGGAAUgcGCCaGGGagccgCGGGCACg -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 98972 0.7 0.939366
Target:  5'- gGUGAGGCgGUGCCGGGagcCGuaGGCGCg -3'
miRNA:   3'- gCGCUUUG-UACGGCCCaaaGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 155394 0.69 0.966695
Target:  5'- aCGaCGAGGCcgGCgGGGggcUGGGCACc -3'
miRNA:   3'- -GC-GCUUUGuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 84538 0.68 0.979898
Target:  5'- aGCGAGAC--GCUGGGgggcUUgGAGUACu -3'
miRNA:   3'- gCGCUUUGuaCGGCCCa---AAgCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 163671 0.68 0.972558
Target:  5'- uGCGGAGC-UGCUcaacaaguGGGUcUCGcAGCGCa -3'
miRNA:   3'- gCGCUUUGuACGG--------CCCAaAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 155331 0.69 0.956326
Target:  5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3'
miRNA:   3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 195753 0.75 0.763685
Target:  5'- aCGCGGAAgAUGuCCGGGUUUCc-GUACa -3'
miRNA:   3'- -GCGCUUUgUAC-GGCCCAAAGcuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 81 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 50281 0.75 0.77306
Target:  5'- aGCGGcgcuucacgGACAUGCCGuuaGGUUUCGGGC-Cg -3'
miRNA:   3'- gCGCU---------UUGUACGGC---CCAAAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 178802 0.7 0.948306
Target:  5'- gGCGAGGCAUGCCcGG---CGGGCGg -3'
miRNA:   3'- gCGCUUUGUACGGcCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 240630 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 74470 0.68 0.979898
Target:  5'- aGCGAGcACGUcCUGGGcUUCGAGCu- -3'
miRNA:   3'- gCGCUU-UGUAcGGCCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 140190 0.72 0.866122
Target:  5'- gGCGGGACG-GCCGGuUUUCGAGguCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcAAAGCUCguG- -5'
14640 3' -52.5 NC_003521.1 + 186745 0.71 0.929487
Target:  5'- gGCGAGccCAUGCUGGGgcUCGgcGGCAUc -3'
miRNA:   3'- gCGCUUu-GUACGGCCCaaAGC--UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.