miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 65043 0.66 0.982371
Target:  5'- gCUGUGGgguaugccucuaACAACgAGCCCG-GGGACc- -3'
miRNA:   3'- -GACACCa-----------UGUUG-UUGGGCgCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 36395 0.67 0.961926
Target:  5'- -cGUGcUGCuGGCGGCagCGCGGGGCGUg -3'
miRNA:   3'- gaCACcAUG-UUGUUGg-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 166212 0.71 0.826465
Target:  5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3'
miRNA:   3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 39229 0.66 0.978631
Target:  5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3'
miRNA:   3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 17975 0.66 0.982754
Target:  5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3'
miRNA:   3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5'
14640 5' -54.8 NC_003521.1 + 149055 0.66 0.980775
Target:  5'- gUGUGGgGgGAUgcggGACCCGCGGGGu-- -3'
miRNA:   3'- gACACCaUgUUG----UUGGGCGCCCUgca -5'
14640 5' -54.8 NC_003521.1 + 196954 0.72 0.801011
Target:  5'- -cGUGG-GCGACGGCCCGggagccggcCGGGGCGc -3'
miRNA:   3'- gaCACCaUGUUGUUGGGC---------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 174057 0.77 0.520612
Target:  5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3'
miRNA:   3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 38456 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 68252 0.7 0.893073
Target:  5'- cCUGgcGGUGCGACcgccGACCC-CGGGACa- -3'
miRNA:   3'- -GACa-CCAUGUUG----UUGGGcGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 77667 0.66 0.976315
Target:  5'- -cGUcGGgagACAGCAGgCCGgGGGGCa- -3'
miRNA:   3'- gaCA-CCa--UGUUGUUgGGCgCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 148461 0.68 0.927973
Target:  5'- -gGUGcGUGCugauGACGaaaaGCCCGCGGGuCGUu -3'
miRNA:   3'- gaCAC-CAUG----UUGU----UGGGCGCCCuGCA- -5'
14640 5' -54.8 NC_003521.1 + 86177 0.68 0.927973
Target:  5'- ---cGGUGCGcaccaGCGACUCGCGGGccACGg -3'
miRNA:   3'- gacaCCAUGU-----UGUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 58742 0.68 0.927973
Target:  5'- ---cGGUGCAGCAGCCacuGCGGGcUGa -3'
miRNA:   3'- gacaCCAUGUUGUUGGg--CGCCCuGCa -5'
14640 5' -54.8 NC_003521.1 + 30263 0.67 0.961926
Target:  5'- -cGUGGcGCAGCuGACCCugGCGGGcGCGc -3'
miRNA:   3'- gaCACCaUGUUG-UUGGG--CGCCC-UGCa -5'
14640 5' -54.8 NC_003521.1 + 219259 0.67 0.965198
Target:  5'- ---gGGUAgAGCAggGCCCGCaGGGGCu- -3'
miRNA:   3'- gacaCCAUgUUGU--UGGGCG-CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 238683 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 101772 0.66 0.971139
Target:  5'- -gGUGGUGCAGCAGgUUGCGcaggucaguuGGGCGc -3'
miRNA:   3'- gaCACCAUGUUGUUgGGCGC----------CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 85480 0.66 0.971139
Target:  5'- -cGUGGUGCcGguGCCCGCgcccccgccGGGACc- -3'
miRNA:   3'- gaCACCAUGuUguUGGGCG---------CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 120914 0.66 0.971139
Target:  5'- gCUGcuUGcGUuuGCGGCuGCCCGCGGcGGCGg -3'
miRNA:   3'- -GAC--AC-CA--UGUUGuUGGGCGCC-CUGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.