miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 14437 0.79 0.420492
Target:  5'- -cGUGGUGCAcACGGCCCuGCGGcGGCGUc -3'
miRNA:   3'- gaCACCAUGU-UGUUGGG-CGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 165123 0.67 0.958446
Target:  5'- gCUGUGGUGCgGACGGgggcuggaCCGCGGugccGGCGUg -3'
miRNA:   3'- -GACACCAUG-UUGUUg-------GGCGCC----CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 38456 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 17975 0.66 0.982754
Target:  5'- gCUGUGGUGCGaguacguguaucGCcACCCGCa-GACGc -3'
miRNA:   3'- -GACACCAUGU------------UGuUGGGCGccCUGCa -5'
14640 5' -54.8 NC_003521.1 + 168118 0.71 0.834623
Target:  5'- -cGUGGaucgccgaggACGACAGCgCCGUGGGugGa -3'
miRNA:   3'- gaCACCa---------UGUUGUUG-GGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 117711 0.71 0.850408
Target:  5'- ----cGUACAGCGGCCCgGCGaGGACGg -3'
miRNA:   3'- gacacCAUGUUGUUGGG-CGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 24887 0.7 0.858022
Target:  5'- --aUGGUGCGcuaccucacCAugCCGCGGGACGc -3'
miRNA:   3'- gacACCAUGUu--------GUugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 16995 0.7 0.872661
Target:  5'- ---aGGgACAGCAggcGCCCGCGGuGGCGg -3'
miRNA:   3'- gacaCCaUGUUGU---UGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 138317 0.69 0.92272
Target:  5'- -cGUGGccgACAugGACCUGCGGcugcgcGACGg -3'
miRNA:   3'- gaCACCa--UGUugUUGGGCGCC------CUGCa -5'
14640 5' -54.8 NC_003521.1 + 178779 0.68 0.950847
Target:  5'- --aUGGuUGCGGCgu-CCGCGGGACGg -3'
miRNA:   3'- gacACC-AUGUUGuugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 38163 0.68 0.94672
Target:  5'- gUGUaGGUGCAggGCGuCCCaGCGGGGCc- -3'
miRNA:   3'- gACA-CCAUGU--UGUuGGG-CGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 185188 0.69 0.9211
Target:  5'- cCUGUGGaGCGugAcgcccucgguguggGCCgCGCGGGACu- -3'
miRNA:   3'- -GACACCaUGUugU--------------UGG-GCGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 174057 0.77 0.520612
Target:  5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3'
miRNA:   3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 167942 0.68 0.94672
Target:  5'- -cGUGuaGCGugAGCCUGCGGuGACGa -3'
miRNA:   3'- gaCACcaUGUugUUGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 196954 0.72 0.801011
Target:  5'- -cGUGG-GCGACGGCCCGggagccggcCGGGGCGc -3'
miRNA:   3'- gaCACCaUGUUGUUGGGC---------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 173242 0.69 0.899448
Target:  5'- -cGUGuugGCGACucugGCCCGCGGGGCc- -3'
miRNA:   3'- gaCACca-UGUUGu---UGGGCGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 14478 0.68 0.94672
Target:  5'- ------cGCGGCGcuACCCGCGGGGCGc -3'
miRNA:   3'- gacaccaUGUUGU--UGGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 36395 0.67 0.961926
Target:  5'- -cGUGcUGCuGGCGGCagCGCGGGGCGUg -3'
miRNA:   3'- gaCACcAUG-UUGUUGg-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 166212 0.71 0.826465
Target:  5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3'
miRNA:   3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 191274 0.71 0.850408
Target:  5'- -gGUGGUGCucuuCAugacGCCCaaGUGGGACGUg -3'
miRNA:   3'- gaCACCAUGuu--GU----UGGG--CGCCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.