miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14642 5' -54.9 NC_003521.1 + 200261 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 240582 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 33 0.66 0.984235
Target:  5'- uGCCGUGGCcgGGAucggugagucacggaACCGguuuccgCGgCGGCGUg -3'
miRNA:   3'- -CGGCAUCG--CCU---------------UGGUaa-----GCaGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 92108 0.66 0.983517
Target:  5'- uGCCccgGGuCGGAACCcccgggugcgGUUCGggCGGCGg -3'
miRNA:   3'- -CGGca-UC-GCCUUGG----------UAAGCa-GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 188064 0.66 0.983517
Target:  5'- uGCCGcGGUaGAGCCGcUCGUCucccgauccccuGGCGUg -3'
miRNA:   3'- -CGGCaUCGcCUUGGUaAGCAG------------CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 12546 0.66 0.983517
Target:  5'- cGCCGUGGaGGAcGCCGagCGUCuggagaugcccgGGCGUu -3'
miRNA:   3'- -CGGCAUCgCCU-UGGUaaGCAG------------CCGCA- -5'
14642 5' -54.9 NC_003521.1 + 117236 0.66 0.982203
Target:  5'- gGCCGcGGCGGcucccggcgccgccGCCAUcccgccaccgccgUCGUCGGcCGUg -3'
miRNA:   3'- -CGGCaUCGCCu-------------UGGUA-------------AGCAGCC-GCA- -5'
14642 5' -54.9 NC_003521.1 + 137373 0.66 0.981616
Target:  5'- cGCCGUGGCGcGcAACCGccgCGaccUGGCGg -3'
miRNA:   3'- -CGGCAUCGC-C-UUGGUaa-GCa--GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 167726 0.66 0.981616
Target:  5'- aGCgGUAGUGGuaGACCGggUCGUacCGGuCGUg -3'
miRNA:   3'- -CGgCAUCGCC--UUGGUa-AGCA--GCC-GCA- -5'
14642 5' -54.9 NC_003521.1 + 103636 0.66 0.981616
Target:  5'- cGCCGacuccAGCGGGGgCAgcUCGgCGGCGg -3'
miRNA:   3'- -CGGCa----UCGCCUUgGUa-AGCaGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 103356 0.66 0.981616
Target:  5'- cGCCGgcGCccuuCCAcUCGUCGGUGc -3'
miRNA:   3'- -CGGCauCGccuuGGUaAGCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 133013 0.66 0.980399
Target:  5'- uGCCGcGGUGGAACacccuaaucacCGUCGGCu- -3'
miRNA:   3'- -CGGCaUCGCCUUGguaa-------GCAGCCGca -5'
14642 5' -54.9 NC_003521.1 + 120661 0.66 0.979555
Target:  5'- aUCGUGGaaGAugCGguagacaUCGUCGGCGUc -3'
miRNA:   3'- cGGCAUCgcCUugGUa------AGCAGCCGCA- -5'
14642 5' -54.9 NC_003521.1 + 39865 0.66 0.977327
Target:  5'- uGCaCGUGGUGGggUUGUgcaCGUUGGgGUg -3'
miRNA:   3'- -CG-GCAUCGCCuuGGUAa--GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 240092 0.66 0.977327
Target:  5'- uGCaCGUGGUGGggUUGUgcaCGUUGGgGUg -3'
miRNA:   3'- -CG-GCAUCGCCuuGGUAa--GCAGCCgCA- -5'
14642 5' -54.9 NC_003521.1 + 36902 0.66 0.977327
Target:  5'- aGCCGUGGUGGAagagGCUucgUGUCGGa-- -3'
miRNA:   3'- -CGGCAUCGCCU----UGGuaaGCAGCCgca -5'
14642 5' -54.9 NC_003521.1 + 6870 0.66 0.977327
Target:  5'- --gGUAGCGGAuCCGU-CGUCGuCGUg -3'
miRNA:   3'- cggCAUCGCCUuGGUAaGCAGCcGCA- -5'
14642 5' -54.9 NC_003521.1 + 36790 0.66 0.974925
Target:  5'- gGCCacgcgcuGCGGAGCCGcUCGcggaCGGCGg -3'
miRNA:   3'- -CGGcau----CGCCUUGGUaAGCa---GCCGCa -5'
14642 5' -54.9 NC_003521.1 + 95791 0.66 0.974925
Target:  5'- uGCCGcu-CGGccacgcGACCAgcgCGUCGGCGa -3'
miRNA:   3'- -CGGCaucGCC------UUGGUaa-GCAGCCGCa -5'
14642 5' -54.9 NC_003521.1 + 18726 0.67 0.972343
Target:  5'- uGCCGcUGGCGGcGgCGaUCGUggCGGCGg -3'
miRNA:   3'- -CGGC-AUCGCCuUgGUaAGCA--GCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.