Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14698 | 5' | -52.4 | NC_003529.1 | + | 62823 | 0.66 | 0.987105 |
Target: 5'- -cGCGUCGA-CGCGAucgauuCCAUUGuuGCg -3' miRNA: 3'- caUGCAGCUcGUGCUc-----GGUAAUggCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 128806 | 0.66 | 0.987105 |
Target: 5'- uGUACGaaaUCGuauuuuuGCAUGAGCauguccUGCCGCa -3' miRNA: 3'- -CAUGC---AGCu------CGUGCUCGgua---AUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 139461 | 0.66 | 0.987105 |
Target: 5'- uGUGC-UCGAGUcuuCGAGCUGuUUACCaGCa -3' miRNA: 3'- -CAUGcAGCUCGu--GCUCGGU-AAUGG-CG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 123685 | 0.66 | 0.985437 |
Target: 5'- uUugGUCGAGCAgCGAuGCgCAUUcguuuUCGCu -3' miRNA: 3'- cAugCAGCUCGU-GCU-CG-GUAAu----GGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 139360 | 0.66 | 0.985437 |
Target: 5'- ----uUCGAGCuCGGGUUAUUAUUGCg -3' miRNA: 3'- caugcAGCUCGuGCUCGGUAAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 16842 | 0.66 | 0.98361 |
Target: 5'- aUAC-UCG-GCGCGuGCCAcUUGCCGa -3' miRNA: 3'- cAUGcAGCuCGUGCuCGGU-AAUGGCg -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 45020 | 0.66 | 0.981613 |
Target: 5'- aUGCGUCuGGCACGgAGUCAacuguUUAUgGCa -3' miRNA: 3'- cAUGCAGcUCGUGC-UCGGU-----AAUGgCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 20699 | 0.66 | 0.981613 |
Target: 5'- uGUAUGcCGAggGCGuCGAGCa--UGCCGCg -3' miRNA: 3'- -CAUGCaGCU--CGU-GCUCGguaAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 29576 | 0.66 | 0.97944 |
Target: 5'- uUACGUUG-GCACaGcAGCUGUUGgCGCa -3' miRNA: 3'- cAUGCAGCuCGUG-C-UCGGUAAUgGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 148881 | 0.66 | 0.978752 |
Target: 5'- cUACGUCuuGCACGuGCgGggcguuucgcgugaUUGCCGCc -3' miRNA: 3'- cAUGCAGcuCGUGCuCGgU--------------AAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 43861 | 0.66 | 0.977082 |
Target: 5'- aUACGcggCGGGUacugcaccACGAGCagcgUGCCGCg -3' miRNA: 3'- cAUGCa--GCUCG--------UGCUCGgua-AUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 25442 | 0.67 | 0.971778 |
Target: 5'- gGUAUaUCGGGCAUaguGGCCGgcggguUUGCCGCu -3' miRNA: 3'- -CAUGcAGCUCGUGc--UCGGU------AAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 129209 | 0.67 | 0.968818 |
Target: 5'- cGUACGgggUGAGCAgGgcAGCUAUUgugGCCGUc -3' miRNA: 3'- -CAUGCa--GCUCGUgC--UCGGUAA---UGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 110249 | 0.67 | 0.968818 |
Target: 5'- aUACGcCG-GUGCaAGCgAUUGCCGCa -3' miRNA: 3'- cAUGCaGCuCGUGcUCGgUAAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 126539 | 0.68 | 0.954773 |
Target: 5'- -cAUGUCGAGCGCGGcuucGUCAcUugCGUu -3' miRNA: 3'- caUGCAGCUCGUGCU----CGGUaAugGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 135211 | 0.68 | 0.950684 |
Target: 5'- -gAUGUCGGGCAa-AGUauacaaAUUACCGCg -3' miRNA: 3'- caUGCAGCUCGUgcUCGg-----UAAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 21334 | 0.68 | 0.941784 |
Target: 5'- -aGCGgcgCGAGaUGCGAGCCGU--CCGUg -3' miRNA: 3'- caUGCa--GCUC-GUGCUCGGUAauGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 12583 | 0.68 | 0.941784 |
Target: 5'- -aAUGUCGAGUcauauuaugcaaACGAGUCAUUGUCGUc -3' miRNA: 3'- caUGCAGCUCG------------UGCUCGGUAAUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 609 | 0.69 | 0.936967 |
Target: 5'- --uCGUgGGGCACGuAGUCGggAUCGCa -3' miRNA: 3'- cauGCAgCUCGUGC-UCGGUaaUGGCG- -5' |
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14698 | 5' | -52.4 | NC_003529.1 | + | 108545 | 0.69 | 0.930335 |
Target: 5'- uUAUGUCGAGaagcaaauaggguaUGCGAucGCCGUUGCCGg -3' miRNA: 3'- cAUGCAGCUC--------------GUGCU--CGGUAAUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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