miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 5' -52.5 NC_001335.1 + 37339 0.66 0.851562
Target:  5'- aUGGA-GAAcGGC-ACCAcCAGGACACg -3'
miRNA:   3'- -ACCUgCUU-CCGuUGGUcGUCUUGUGg -5'
1487 5' -52.5 NC_001335.1 + 36856 0.66 0.842745
Target:  5'- cGGGCucGGGUAGuCCAuCAGGuCACCg -3'
miRNA:   3'- aCCUGcuUCCGUU-GGUcGUCUuGUGG- -5'
1487 5' -52.5 NC_001335.1 + 13529 0.66 0.842745
Target:  5'- cGaGACGAGGGacgccguccgaGACgAGCGGAACAa- -3'
miRNA:   3'- aC-CUGCUUCCg----------UUGgUCGUCUUGUgg -5'
1487 5' -52.5 NC_001335.1 + 37693 0.66 0.851562
Target:  5'- gGGACGGGuguacaccGUGACCGGCGcGAACAgCg -3'
miRNA:   3'- aCCUGCUUc-------CGUUGGUCGU-CUUGUgG- -5'
1487 5' -52.5 NC_001335.1 + 11564 0.66 0.842745
Target:  5'- gUGGAucggUGAAGGCGACaugaAGCccauCACCa -3'
miRNA:   3'- -ACCU----GCUUCCGUUGg---UCGucuuGUGG- -5'
1487 5' -52.5 NC_001335.1 + 33801 0.66 0.813974
Target:  5'- aGGuCG-AGGUAgucggucuugccgGCCGGCGucacGAACGCCg -3'
miRNA:   3'- aCCuGCuUCCGU-------------UGGUCGU----CUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 28039 0.66 0.833695
Target:  5'- gGGAUGAcgcuGGC--CCGGaacucaaGGAACACCa -3'
miRNA:   3'- aCCUGCUu---CCGuuGGUCg------UCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 1266 0.66 0.814934
Target:  5'- gUGGAgcCGgcGGCGguGgCAGCAGccccAACACCc -3'
miRNA:   3'- -ACCU--GCuuCCGU--UgGUCGUC----UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 34414 0.66 0.833695
Target:  5'- cGGugGA--GUGGCCAGCGGccCGCUg -3'
miRNA:   3'- aCCugCUucCGUUGGUCGUCuuGUGG- -5'
1487 5' -52.5 NC_001335.1 + 17058 0.66 0.851562
Target:  5'- cGGACccagagcuugGAGGGCu-CCGGU-GAGCAUCg -3'
miRNA:   3'- aCCUG----------CUUCCGuuGGUCGuCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 3331 0.66 0.824421
Target:  5'- aUGGuccaGCGGAagucccGGCcuguGACCAgGCAGAGCAUCu -3'
miRNA:   3'- -ACC----UGCUU------CCG----UUGGU-CGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 28205 0.66 0.851562
Target:  5'- uUGGAacccugGAGGGCAACgagauCGGCGucuACACCg -3'
miRNA:   3'- -ACCUg-----CUUCCGUUG-----GUCGUcu-UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 46908 0.66 0.842745
Target:  5'- aGGuCG-AGGCGAgCaAGCAaggguuGGACACCa -3'
miRNA:   3'- aCCuGCuUCCGUUgG-UCGU------CUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 28381 0.67 0.805245
Target:  5'- -cGAUcaGGAGGUAcgcACCGGCGGcguACACCu -3'
miRNA:   3'- acCUG--CUUCCGU---UGGUCGUCu--UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 1200 0.67 0.794367
Target:  5'- gGGagcaGCGGAGGCGGCaagggaaCGGCA--GCGCCg -3'
miRNA:   3'- aCC----UGCUUCCGUUG-------GUCGUcuUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 7675 0.67 0.805245
Target:  5'- aGGugGAgucgccucGGGCGAUgAGCAGGcccuCGCg -3'
miRNA:   3'- aCCugCU--------UCCGUUGgUCGUCUu---GUGg -5'
1487 5' -52.5 NC_001335.1 + 35255 0.67 0.764694
Target:  5'- aGGGCaccAAGGuCAucguCCAGCGGGACgagACCa -3'
miRNA:   3'- aCCUGc--UUCC-GUu---GGUCGUCUUG---UGG- -5'
1487 5' -52.5 NC_001335.1 + 20291 0.67 0.775078
Target:  5'- cGGACGAAcccGGuCAGCCAcgaaccGCcGAACGCg -3'
miRNA:   3'- aCCUGCUU---CC-GUUGGU------CGuCUUGUGg -5'
1487 5' -52.5 NC_001335.1 + 45557 0.67 0.78429
Target:  5'- aGGACG-AGGCcaucaagGAUCuGCGGAagugguuccGCGCCg -3'
miRNA:   3'- aCCUGCuUCCG-------UUGGuCGUCU---------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 19048 0.67 0.785305
Target:  5'- gGGACGuucGGGgggaaCGGCCAGgGGAaguucgGCACCu -3'
miRNA:   3'- aCCUGCu--UCC-----GUUGGUCgUCU------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.